PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g22510
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 376aa    MW: 42793.6 Da    PI: 8.2204
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g22510genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-07217239123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C++Cgk F+r  nL+ H+r H
  Tp6g22510 217 HYCQICGKGFKRDANLRMHMRAH 239
                68*******************99 PP
2zf-C2H214.10.00014338353621
                TTEEESSHHHHHHHHH CS
    zf-C2H2   6 CgksFsrksnLkrHir 21 
                Cg++Fsrk+ L++Hi+
  Tp6g22510 338 CGTRFSRKDKLMSHIS 353
                **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.99E-6215241No hitNo description
PROSITE profilePS5015712.632217244IPR007087Zinc finger, C2H2
SMARTSM003550.0028217239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-6217244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0025218237No hitNo description
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
SMARTSM00355160268301IPR015880Zinc finger, C2H2-like
SMARTSM0035555306328IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MNQGEHIMNN GEGLMSCFSE TTTTSSNPVY YNPMMAAMKS SEDDDIISLS LLLNLSTIQD  60
KVHQIQSLVS FFMISTDNNN QSAESRSSTL AVANIGGLVQ EIITAASSMM FTCQQLHISS  120
NNNSNIVNDQ TADATVMEFS PQEINSSHDF MRESSTNVLG VQERGHISFL DQTAQNLEWY  180
GTQTINPKKD HPLCKSRFEN YGIVELGVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG  240
DEYKTREALI NPTSHEKKIE YSLKRYYYSC PQQGCRWNQR HEKFQPLKSV ICAKNHYKRS  300
HCPKLYMCRR CNVKHFSVLS DLRTHEKHCG YIKWVCSCGT RFSRKDKLMS HISLFLGHSP  360
AHGPPQQQPP MTLITP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g22510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665869.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT240.0STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A078CCG30.0A0A078CCG3_BRANA; BnaA04g16510D protein
STRINGBra002438.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-180C2H2 family protein