PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g21790
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 271aa    MW: 30647.7 Da    PI: 5.2831
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g21790genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.62.9e-1514104194
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                ffkv +p d++    l +p +f   + ++k  +k +t+++  g+ W+++l+  r+  +++ + +GWk+ vk+ +Lk g+f+ F++dg+++f++++
  Tp6g21790  14 FFKVYLPDDSGD--DLEVPVSFN--NCLPKSLPKNVTVRSIYGKIWKLELRKcRGDTEKFSMVDGWKRIVKDENLKGGEFLAFEFDGSRCFNFCI 104
                788886655554..4999***96..546788999****************664445555***************************999996554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-198110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1711107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.01212108IPR003340B3 DNA binding domain
CDDcd100171.00E-1512105No hitNo description
PfamPF023627.1E-1314104IPR003340B3 DNA binding domain
SMARTSM010193.4E-1614108IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-11167265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-7168264IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNKGHSSDDF LPKFFKVYLP DDSGDDLEVP VSFNNCLPKS LPKNVTVRSI YGKIWKLELR  60
KCRGDTEKFS MVDGWKRIVK DENLKGGEFL AFEFDGSRCF NFCIYGHATC KRRGSSVKTK  120
EIKDESDGKV DKSSVDVIVI DDDDDFDIDD QDSGDEDESS EDIIYLDDPD NPSFTVILNP  180
KKKSQLLIPT HVIKDYNLNF PESITVVDPL VTKFGTLEKK IKVQDNGSVF VKGFGSVFRR  240
NNVKTTDKMI CEVKKSGSDL VHTIKVYIAR G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-1541101104At1g16640
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAPTransfer from AT5G60130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g21790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612534.11e-116PREDICTED: B3 domain-containing protein At5g60130-like isoform X2
RefseqXP_013713842.11e-116B3 domain-containing protein At5g60130-like isoform X2
SwissprotQ9LVG11e-107Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A0D3ECZ61e-114A0A0D3ECZ6_BRAOL; Uncharacterized protein
STRINGBostr.7867s0314.1.p1e-118(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.17e-61B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]