PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g21140

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GRAS

Protein Properties

Length: 618aa MW: 70171.1 Da PI: 5.9934

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g21140	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	392.3	5.4e-120	232	606	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+av+s d+++a++ L++++ ++s++gd +qRla yf+eAL+ar+++ ++ ++ a+p+s+ts +++ l+a+klf++++Pi+ +++aN Tp6g21140 232 LRTLLTQCAQAVASFDQRRATEKLKEIRSHSSSSGDGIQRLAYYFAEALEARITGiISPPVSTAFPSSTTS---MVDILKAYKLFVHACPIYVADYFAAN 328 6789*************************************************7788888888888888...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 + I+e + +++++HiiDf++ +G+QWp+Ll aL++Rp+gpp+lR+Tg++ p+sg ++++eetg+rL++f++ ++vpfefn+ +ak++e+++l+e+ ++ Tp6g21140 329 KSIYELALKATKLHIIDFGVLYGFQWPCLLLALSKRPGGPPMLRVTGIELPQSGfrPSDRVEETGRRLKRFCDMFNVPFEFNF-IAKKWESISLDEITIN 427 *************************************************9*************************.7*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreiv 295 pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e + +ns+ F++rf eal ++s+lfd +++++ +e+ ++r+ +Erell r+++ Tp6g21140 428 PGETTVVNCIHRLQYTPDETVSLDSPRDKVLKLFRDINPDLFVFAEINGTYNSPFFMTRFREALFHFSSLFDIFDTTIQAEDeyKNRALLERELLVRDAM 527 *************************************************************************99998899*********** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +v++ eg er++r et+++Wr r+ +aGFkp+++s++++k ak ++rk + + + ++++++++++gWk+r ++++S+W+ Tp6g21140 528 SVISSEGIERFARPETYKQWRVRILRAGFKPATISKEIMKGAKEIVRKRYHKDFLIDSDNHWMLQGWKGRVIYAFSCWK 606 **********************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.3	206	586	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-117	232	606	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MDALLQVSVD GFRFENGSGS CCKPRNNLDS DNNHFPNFGE PDTQNQSSPS DSPPTVFLDN 60 SPVLKYINDM LMDEEDFVDE SRLLQNNLAL QAAERSFYEI LQQPSPDSDQ NPSSSGQNSG 120 DPDFTFPGNF STTTTLTDSG SLVPNGESQR RYRHRNDEED DLENGRRNKQ PAIFISEMEE 180 LAAKLEHVLL VCKANHEDES SEITKQSPPN RAGRAKSSSN RSKALKSNAV DLRTLLTQCA 240 QAVASFDQRR ATEKLKEIRS HSSSSGDGIQ RLAYYFAEAL EARITGIISP PVSTAFPSST 300 TSMVDILKAY KLFVHACPIY VADYFAANKS IYELALKATK LHIIDFGVLY GFQWPCLLLA 360 LSKRPGGPPM LRVTGIELPQ SGFRPSDRVE ETGRRLKRFC DMFNVPFEFN FIAKKWESIS 420 LDEITINPGE TTVVNCIHRL QYTPDETVSL DSPRDKVLKL FRDINPDLFV FAEINGTYNS 480 PFFMTRFREA LFHFSSLFDI FDTTIQAEDE YKNRALLERE LLVRDAMSVI SSEGIERFAR 540 PETYKQWRVR ILRAGFKPAT ISKEIMKGAK EIVRKRYHKD FLIDSDNHWM LQGWKGRVIY 600 AFSCWKPAEK LTDNHIII

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MDALLQVSVD GFRFENGSGS CCKPRNNLDS DNNHFPNFGE PDTQNQSSPS DSPPTVFLDN  60
SPVLKYINDM LMDEEDFVDE SRLLQNNLAL QAAERSFYEI LQQPSPDSDQ NPSSSGQNSG  120
DPDFTFPGNF STTTTLTDSG SLVPNGESQR RYRHRNDEED DLENGRRNKQ PAIFISEMEE  180
LAAKLEHVLL VCKANHEDES SEITKQSPPN RAGRAKSSSN RSKALKSNAV DLRTLLTQCA  240
QAVASFDQRR ATEKLKEIRS HSSSSGDGIQ RLAYYFAEAL EARITGIISP PVSTAFPSST  300
TSMVDILKAY KLFVHACPIY VADYFAANKS IYELALKATK LHIIDFGVLY GFQWPCLLLA  360
LSKRPGGPPM LRVTGIELPQ SGFRPSDRVE ETGRRLKRFC DMFNVPFEFN FIAKKWESIS  420
LDEITINPGE TTVVNCIHRL QYTPDETVSL DSPRDKVLKL FRDINPDLFV FAEINGTYNS  480
PFFMTRFREA LFHFSSLFDI FDTTIQAEDE YKNRALLERE LLVRDAMSVI SSEGIERFAR  540
PETYKQWRVR ILRAGFKPAT ISKEIMKGAK EIVRKRYHKD FLIDSDNHWM LQGWKGRVIY  600
AFSCWKPAEK LTDNHIII

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-43	238	607	25	380	Protein SCARECROW
5b3h_A	3e-43	238	607	24	379	Protein SCARECROW
5b3h_D	3e-43	238	607	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g21140

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006400957.1	0.0	scarecrow-like protein 11
Swissprot	Q9LTI5	0.0	SCL11_ARATH; Scarecrow-like protein 11
TrEMBL	V4KWN0	0.0	V4KWN0_EUTSA; Uncharacterized protein
STRING	XP_006400957.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]