PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g20590

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

M-type_MADS

Protein Properties

Length: 279aa MW: 32544.9 Da PI: 8.9654

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g20590	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.2	1.6e-16	11	54	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ri n+ r +t+ kR++ + KKA E S+LC+++ ++i++++t Tp6g20590 11 RIANDKTRITTYKKRKACLYKKAGEFSTLCGVQTCLIVYGPTKA 54 89**************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.0E-13	2	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.984	2	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-8	4	24	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.47E-23	5	83	No hit	No description
SuperFamily	SSF55455	1.02E-17	5	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-15	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-8	24	39	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-8	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MAQEKKVNLQ RIANDKTRIT TYKKRKACLY KKAGEFSTLC GVQTCLIVYG PTKATNELIS 60 EPEIWPMDET KARDIIRRYR DTASNSCRKE ADVETFINDI GKAKEMENNN RRVKNHKNKY 120 CRWEEKLDKC SQEQLRGIFD DVGNKLHEAI MRQNRSMIRA HHRAIETPIP QILMDPHYMS 180 QYIGDHQQQQ CLMFPNYNNM GIPLFSPHDD QIRTESNLVD NFADLGLNQG FNMMSKGNHG 240 TQYMQRQAPY YNLEPVVQRS ASFNVNQFAG YQAPQNIPW

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g20590

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018453520.1	1e-151	PREDICTED: agamous-like MADS-box protein AGL82
Swissprot	Q9FIM0	1e-124	AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBL	V4N9P7	1e-148	V4N9P7_EUTSA; Uncharacterized protein
STRING	XP_006401028.1	1e-149	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	1e-123	AGAMOUS-like 82

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]