PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp6g19110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 560aa MW: 60859.9 Da PI: 8.2649 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.9 | 3.3e-15 | 204 | 263 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Tp6g19110 204 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 263 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 46.3 | 1.1e-14 | 308 | 357 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Tp6g19110 308 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 357 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.57E-17 | 204 | 273 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.62E-22 | 204 | 273 | No hit | No description |
Pfam | PF00847 | 3.3E-12 | 204 | 263 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.23 | 205 | 271 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-29 | 205 | 277 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-16 | 205 | 272 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 206 | 217 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 306 | 367 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.23E-24 | 306 | 367 | No hit | No description |
SMART | SM00380 | 3.7E-33 | 307 | 371 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 307 | 365 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-18 | 307 | 365 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 308 | 357 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 347 | 367 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 560 aa Download sequence Send to blast |
MKNNNNKSSS TSSTYDSSLS PSSSSSSHQN WLSFSLSNNN NFNSSSSPNL TSSTSDHHHP 60 HPSHLSLFQA FSTTPVQRQD ASPGVSTDDA TAVLSMYPGG PKLENFLGGG ATTTTTTRAM 120 QQVQSLGNNI VFSSDVQKPH QPLSAAEIYD SELKSIAASF LGNYSGGHSS EVSRGQKQQH 180 NPLAASEVSP TPKKNVESFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQVY 240 LGGYDKEEKA ARAYDLAALK YWGPTTTTNF PISNYEPELE EMKHMTRQEF VASLRRKSSG 300 FSRGASMYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA 360 VTNFDISRYD VKSIASCNLP VGGLMPKPSP ATVAPDKQVD LSPSDPPSLT TSSLTFNVAT 420 PVHDHEGTFF HTGIPIKQDP AAHYWSSVFG FQPNPKPEIR PMVAFGSDLH NHSPGFAMMP 480 VMQDGGNNFG GGFVESEGYN SHSAASSPVS AIPLSSTTTI DNGNEGYGGN INWISNNISN 540 SYQTAKSSLS VLHTPVFGLE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp6g19110 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006401210.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 0.0 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A078HZQ8 | 0.0 | A0A078HZQ8_BRANA; BnaC02g11520D protein | ||||
STRING | XP_006401210.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11583 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57390.1 | 0.0 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|