PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g18630
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 691aa    MW: 75714.3 Da    PI: 5.4781
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g18630genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.6e-08434454525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                +C++f+  G+C++Gd+C F+H
  Tp6g18630 434 PCNNFMTKGYCHRGDNCLFSH 454
                7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.694375402IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6375400IPR000571Zinc finger, CCCH-type
SMARTSM003560.035376401IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.404404428IPR000571Zinc finger, CCCH-type
SMARTSM003560.0039404430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.709429457IPR000571Zinc finger, CCCH-type
SMARTSM003560.58432456IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-6433458IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-5434454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4434454IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
METSVAPFPH RRSHLPTRTY RSSLHHLCSS FDRENQISLA TPAVLQELVF RTEIAQVSAG  60
ETCEPIEICT DEKLPENSSI LEPRSDGGSG ESRAEKVEMI SQEKSLMLGD VFDGIDLQDA  120
SAGSQYKDFF DEFELIINGS EDFVPESCVN LFEALDVNDY DDDCMAKQAI DLVQSVVEKP  180
SIATELQVDS VEGDNKVSEF IGSKAEEVPK LVEVGEVVSS GVLETNNEEM ELEKSVTSSQ  240
VLADSIPKMV EDDDVEEGEI SGDDNDNMLI GDDLPIERHE ESHVSQEVLD KRGEGTSKST  300
CSGVEVLNVE NGVKEHDQTS KTQEKMASET CIKKRSAPSK EAKARKKAKA RKKRAQERIS  360
LGVKKLKLKP VAPKPKPIKY CRHYLKGRCH EGEKCKFSHD TTPETKSLPC CYFATQSCMK  420
GDDCPYDHDL SKYPCNNFMT KGYCHRGDNC LFSHKGTPQA ASDTQSANVT TSSTNIAAAS  480
FSPQNSNYQT VRQAIAKLPA IQAKVSSSAA FLKPSSQSNQ KNSSHASSSV INEHATPPQI  540
PPLRKPSIAP KGMSFLSFYK TSQEENSVKP SLGSNQNTQN SDNQSLKQSQ QRSSVPLVPP  600
KGISFLSFGS EEPASSRNLK TTPNSHIQSS LNSAMKLAAE FESATVEKRT NDLAEAVNKG  660
DVTVKTRVTR NSGNISSKIL EFLSDFSHGK N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332353KKRSAPSKEAKARKKAKARKKR
2344366RKKAKARKKRAQERISLGVKKLK
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g18630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401265.10.0zinc finger CCCH domain-containing protein 65
SwissprotQ9LTS70.0C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBLV4LS750.0V4LS75_EUTSA; Uncharacterized protein
STRINGXP_006401265.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516