PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g18050
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 435aa    MW: 47620.6 Da    PI: 7.0034
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g18050genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005686108123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ Cgk+F +   L  H r H
  Tp6g18050  86 HTCSECGKRFVSGKALGGHKRIH 108
                79**************9999998 PP
2zf-C2H211.10.0012282304123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C  C+ksF++   L  H  +H
  Tp6g18050 282 HVCVTCNKSFTSYQALGGHRASH 304
                79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-683109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.22E-984159No hitNo description
PROSITE profilePS5015711.7886113IPR007087Zinc finger, C2H2
PfamPF139127.4E-986108IPR007087Zinc finger, C2H2
SMARTSM003550.0386108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
PROSITE profilePS501578.559137159IPR007087Zinc finger, C2H2
SMARTSM003555.4137159IPR015880Zinc finger, C2H2-like
PfamPF139120.0015138160IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576678.93E-8281304No hitNo description
PROSITE profilePS501579.556282309IPR007087Zinc finger, C2H2
PfamPF139123.8E-10282306IPR007087Zinc finger, C2H2
SMARTSM003550.37282304IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
SuperFamilySSF576678.93E-8346373No hitNo description
PfamPF139126.4E-13351374IPR007087Zinc finger, C2H2
SMARTSM003550.2351373IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078351373IPR007087Zinc finger, C2H2
PROSITE patternPS000280353373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEQSRGYKAN CGFSLERPRF GSIKVKIPNF EPFIAEERKD IEEDQAEDDE EEAGIIGLKE  60
KEEEDDDGAK SMDLEEGDEE EVEKKHTCSE CGKRFVSGKA LGGHKRIHVL ETRKFAMVRP  120
KMMSGMVGRS ERGEFETNCC VCLKKFTSMK ALYGHMRFHP DRGWKGVLPP PHPLGWPATG  180
KRGRRSALKV DKSDLKDPPS KGMKDIDAKD LLFLATTAEA VNLDVAEASD SHSVEEMMKK  240
RKKRKKRLSE MEKESSSTHD HHQVEGVVAA AAEESGGARE KHVCVTCNKS FTSYQALGGH  300
RASHNKVKIL ENHQARANGE ASLLGTEAMI TGLTSVQGSN TSLSSSNNGD HVCNICHKSF  360
PTGQALGGHK RCHWTGPVSS EAATSAPIAA TAAPTAATAP AAAPSSQVTE IVQEVKRLKR  420
AFLDFDLNEL PPNEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238246KKRKKRKKR
2240246RKKRKKR
3241245KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g18050
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411941e-165AC241194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH124P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455488.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A1J3K9D00.0A0A1J3K9D0_NOCCA; Zinc finger protein ZAT6
STRINGBra035609.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.14e-79C2H2 family protein