PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WRKY

Protein Properties

Length: 354aa MW: 39225.1 Da PI: 4.7535

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g14990	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.4e-31	173	231	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+ Tp6g14990 173 SDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCLARKQVERSNLDPNIFIVTYTGEHTHP 231 79***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.1E-31	159	233	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-27	165	233	IPR003657	WRKY domain
PROSITE profile	PS50811	33.281	167	233	IPR003657	WRKY domain
SMART	SM00774	6.1E-39	172	232	IPR003657	WRKY domain
Pfam	PF03106	3.0E-26	174	231	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007263	Biological Process	nitric oxide mediated signal transduction
GO:0009739	Biological Process	response to gibberellin
GO:0042742	Biological Process	defense response to bacterium
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MSEDWDLFAV VRSCSSSVST ATINTSSRGG DDGGGNCKQQ DLPPLFTHIG GDRERESSSC 60 NELQDSCKPF LPVTTTWLSS SPLPLPSPVV SSAPKVLMKQ EQGLIESQDQ KPSLGVRVFP 120 PPTTIPSSSS VFVFRGQRDQ LLQQQSQTPL RSRKRKNQQK RTICHVTQEN LSSDMWAWRK 180 YGQKPIKGSP YPRNYYRCSS SKGCLARKQV ERSNLDPNIF IVTYTGEHTH PRPTHRNSLA 240 GSTRNKSQPV NPIPKPDRPS GQTVSGSNTV KEEIHLSPTT PLKENDDVQG ANGDEEVNME 300 DEELDEEEEE EEEDEDDDVD DLLIPNFTVR DRDDLFFAGN FPSWSAGSAG DGGG

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MSEDWDLFAV VRSCSSSVST ATINTSSRGG DDGGGNCKQQ DLPPLFTHIG GDRERESSSC  60
NELQDSCKPF LPVTTTWLSS SPLPLPSPVV SSAPKVLMKQ EQGLIESQDQ KPSLGVRVFP  120
PPTTIPSSSS VFVFRGQRDQ LLQQQSQTPL RSRKRKNQQK RTICHVTQEN LSSDMWAWRK  180
YGQKPIKGSP YPRNYYRCSS SKGCLARKQV ERSNLDPNIF IVTYTGEHTH PRPTHRNSLA  240
GSTRNKSQPV NPIPKPDRPS GQTVSGSNTV KEEIHLSPTT PLKENDDVQG ANGDEEVNME  300
DEELDEEEEE EEEDEDDDVD DLLIPNFTVR DRDDLFFAGN FPSWSAGSAG DGGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	8e-20	174	234	18	80	Disease resistance protein RRS1
5w3x_D	8e-20	174	234	18	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00561	DAP	Transfer from AT5G52830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g14990

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU912398	0.0	EU912398.1 Brassica napus WRKY27-1 transcription factor (WRKY27-1) mRNA, partial cds.
GenBank	KC246573	0.0	KC246573.1 Brassica napus WRKY transcription factor 27.1 (WRKY27.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127213.1	0.0	PREDICTED: probable WRKY transcription factor 27
Refseq	XP_013687742.1	0.0	probable WRKY transcription factor 27
Swissprot	Q9FLX8	1e-138	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A1J3E274	0.0	A0A1J3E274_NOCCA; Putative WRKY transcription factor 27
STRING	Bra022612.1-P	1e-180	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9998	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	1e-113	WRKY DNA-binding protein 27

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]