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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g14690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | GRAS | ||||||||
Protein Properties | Length: 647aa MW: 70032.4 Da PI: 5.0061 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 371.1 | 1.5e-113 | 268 | 647 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +++++e+A+a+++g++e a+++Lar+s++ ++++++ ++l+ +++ AL++r+ a ++s+++e +e+l +++l++e+sP++k+++++aN a Tp6g14690 268 RQTVMEIATAIAEGKTEIASEILARVSQTPNQKRNSEEKLVDFMVTALRSRIKP-------AESTSPATELYGKEHLISTQLLYELSPCFKLGFMAANLA 360 6889*************************************************9.......334445554559*************************** PP GRAS 102 Ileavege....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvakrled 188 Il+a+ ++ +H+iDf+i++G+Q+++Ll+aL++R+ ++pp ++iT+v +++ g +e+l+++g+rL+++ ++lg++++fnv+++ rl d Tp6g14690 361 ILDAAGNNddegMLMHVIDFEIGEGGQYVNLLHALSTRRsgKNPPVVKITAVTNNTDGfsvagdrGEEKLKAVGDRLSELGDRLGISVRFNVVASLRLGD 460 *****9998875667*********************99977779**********988899***9999*************************8888**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 l+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl r++e++ +y al+ds+e+++p+ +++r+kvE+ Tp6g14690 461 LSRESLGCDPDEPLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLDSVESTVPSSNSDRAKVEEG 560 **************************************************************************************************** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +gr++ nvvaceg er+er+e ++kWr+r+++aGF+ +plsek+a+++k+ l++ + g++v+e++g +++gW++r+L ++SaWr Tp6g14690 561 -IGRKLINVVACEGIERIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRLSNGNrvHPGFTVKEDNGGVCFGWMGRTLAVASAWR 647 .**************************************************9998777789**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 48.139 | 241 | 625 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.2E-111 | 268 | 647 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MASGFSGGGG GPEFYGVSGR STPGGPGTVI NSGNNNSQPT YRNQIPGIFL DQIGNRIPGG 60 NIAGKRTLAD FQAAQQQLQH QQQQSFHNQA AINAFLLRSV KPRTFQNLQS STIDLTSVND 120 MNLFSGSSQR YGSQFLPNLR SQTQQQPDFG LYGGIRMGFE SDNQTLAGVP CIEPVQNVNR 180 VGESESMLNS LRELEKQLLD DDDESDAQGG DDDVSVITHS NSEWMQSLVT PDSNPNPNPN 240 PVSSSSPSSS SSSSSPSTAS TTTPVCSRQT VMEIATAIAE GKTEIASEIL ARVSQTPNQK 300 RNSEEKLVDF MVTALRSRIK PAESTSPATE LYGKEHLIST QLLYELSPCF KLGFMAANLA 360 ILDAAGNNDD EGMLMHVIDF EIGEGGQYVN LLHALSTRRS GKNPPVVKIT AVTNNTDGFS 420 VAGDRGEEKL KAVGDRLSEL GDRLGISVRF NVVASLRLGD LSRESLGCDP DEPLAVNLAF 480 KLYRVPDESV CTENPRDELL RRVKGLKPRV VTLVEQEMNS NTAPFLGRVS ESCACYGALL 540 DSVESTVPSS NSDRAKVEEG IGRKLINVVA CEGIERIERC EVFGKWRMRM SMAGFELMPL 600 SEKIAESMKS RLSNGNRVHP GFTVKEDNGG VCFGWMGRTL AVASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 9e-34 | 273 | 646 | 24 | 377 | Protein SCARECROW |
5b3h_D | 9e-34 | 273 | 646 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g14690 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006401816.1 | 0.0 | scarecrow-like protein 8 | ||||
Swissprot | Q9FYR7 | 0.0 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A1J3I715 | 0.0 | A0A1J3I715_NOCCA; Scarecrow-like protein 8 | ||||
TrEMBL | A0A1J3K861 | 0.0 | A0A1J3K861_NOCCA; Scarecrow-like protein 8 | ||||
STRING | XP_006401816.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4350 | 28 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 0.0 | SCARECROW-like 8 |