PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g14420
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 699aa    MW: 78110.9 Da    PI: 6.7741
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g14420genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.9e-1953107256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k +++t++q++eLe++F+ +++p++++r eL +kl L+ rq+k+WFqNrR+++k
  Tp6g14420  53 TKYRRHTSYQIQELESFFKACPHPNEKQRLELGSKLALESRQIKFWFQNRRTQMK 107
                678899**********************************************999 PP
2START170.79.5e-542254425206
                HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT...... CS
      START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg...... 88 
                 a++el+k+a+++ p+W k s    es n de++++f+  k   +  e ++++g+v  ++ +lve+l+d++ +W e+++     a+t+evis+g      
  Tp6g14420 225 VAMDELIKLAELDNPLWIKCSksekESMNHDEYRSIFTGRKHpgFIAEGSKETGFVLINSLTLVEILMDTN-RWAEMCEcivaVASTIEVISNGsggstn 323
                589******************99999999********777768899999**********************.**************************** PP

                EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
      START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                g lqlm ae+q++splvp R + f+Ry++q+++g w++vdvS d +++ ++ +s+   ++lpSg++i++ +ng skvtw+eh +++ +++h l+++l++s
  Tp6g14420 324 GSLQLMEAEFQVISPLVPiRQVKFLRYCKQHEDGLWAVVDVSYDMNKEDENLKSYDGFRRLPSGCIIQDIGNGCSKVTWIEHSEYERNQIHPLYKQLLSS 423
                *************************************************9988888788***************************************** PP

                HHHHHHHHHHHHTXXXXXX CS
      START 188 glaegaktwvatlqrqcek 206
                ++  ga +w+atlqrqce+
  Tp6g14420 424 SVGLGATKWLATLQRQCES 442
                *****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-1836109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-2038109IPR009057Homeodomain-like
PROSITE profilePS5007116.98949109IPR001356Homeobox domain
SMARTSM003892.2E-1551113IPR001356Homeobox domain
PfamPF000461.3E-1653107IPR001356Homeobox domain
CDDcd000861.16E-1456109No hitNo description
PROSITE profilePS5084846.093212445IPR002913START domain
CDDcd088754.39E-108217441No hitNo description
SuperFamilySSF559617.83E-30217443No hitNo description
SMARTSM002341.4E-38221442IPR002913START domain
PfamPF018524.0E-47225442IPR002913START domain
SuperFamilySSF559611.18E-15473692No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MNGDLDLDMS RGDLNPSFLR RFRDDEFESD SFDAMSGGDD KDEQRPKKKK KKTKYRRHTS  60
YQIQELESFF KACPHPNEKQ RLELGSKLAL ESRQIKFWFQ NRRTQMKTQL ERHENAILRQ  120
ENEKLRVENG VLKEAMRNPI CNNCGGAVIP DEVSYEQQQL RIENAKLKYE LDKLCALANR  180
FIGGSISFEQ PSTGGNGSQD FSTRHGFTRG TLMCESSMFL DLAMVAMDEL IKLAELDNPL  240
WIKCSKSEKE SMNHDEYRSI FTGRKHPGFI AEGSKETGFV LINSLTLVEI LMDTNRWAEM  300
CECIVAVAST IEVISNGSGG STNGSLQLME AEFQVISPLV PIRQVKFLRY CKQHEDGLWA  360
VVDVSYDMNK EDENLKSYDG FRRLPSGCII QDIGNGCSKV TWIEHSEYER NQIHPLYKQL  420
LSSSVGLGAT KWLATLQRQC ESYTTLLSSQ DHTGLSLAGT KSTLTLAQRM KCNFYSGITA  480
SPIHKWDKLV AENLGQDTRI LTRKSLQPSG IVLSAATSMW LPVTQQRLFE FLCDSKCRNQ  540
WDILANGASM ENMLLIPKGQ HEGRCVSLLS PAGKHQNESS MLILQETWND ASGALVVYAP  600
VDVPSMNIVM SGGDSANMAL LPSGFSILPD GSSSSWSDQT STNGSLVNHE SKGCLLTLGF  660
QIIVNSKPTA KLNMESVQTV NNLIACTIHK IKAALGIPA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00559DAPTransfer from AT5G52170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g14420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106897.10.0PREDICTED: homeobox-leucine zipper protein HDG7
RefseqXP_013686466.10.0homeobox-leucine zipper protein HDG7-like
SwissprotQ9LTK30.0HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBLA0A3P6CY220.0A0A3P6CY22_BRACM; Uncharacterized protein
STRINGBra028295.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0homeodomain GLABROUS 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]