PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp6g14250

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C2H2

Protein Properties

Length: 397aa MW: 45666.4 Da PI: 6.883

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g14250	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	152	175	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H Tp6g14250 152 YVCGVCGRKCKTNIDLKKHFKQlH 175 9******************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	1.1E-4	72	142	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.741	152	180	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	154	175	IPR007087	Zinc finger, C2H2
CDD	cd06167	7.10E-12	165	306	No hit	No description
Gene3D	G3DSA:3.40.50.1010	1.1E-4	237	291	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MSLFCNSIET LYPKPYLPQK SHFFSFSDSK FRNPTFAGFP RRRQFAIKSC LKTASSSEID 60 MVRNKEGVFA PKEKKVVVLW DLDNKPPRGP PYEAATALRR VAEKLGRVVE ISAYANRHAF 120 IHLPHWVVEE RRSRRNLDFA ERKGEVTPIE PYVCGVCGRK CKTNIDLKKH FKQLHERERQ 180 KKVNRMRSLK GKKRQKFKER YVSGNEKYNE AARRLLTPKV GYGLEAELRR AGVYVKTVED 240 KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTVVV SDRDGALGRQ 300 ADLWVPWIGV QNGEIGEADL MPEKRRRFDE ETEGESGGDG LFSLSYEENE TAEMSVESDG 360 FGRFNVSAFS EDEWVEDEED DFALSDSDED SDDELSF

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MSLFCNSIET LYPKPYLPQK SHFFSFSDSK FRNPTFAGFP RRRQFAIKSC LKTASSSEID  60
MVRNKEGVFA PKEKKVVVLW DLDNKPPRGP PYEAATALRR VAEKLGRVVE ISAYANRHAF  120
IHLPHWVVEE RRSRRNLDFA ERKGEVTPIE PYVCGVCGRK CKTNIDLKKH FKQLHERERQ  180
KKVNRMRSLK GKKRQKFKER YVSGNEKYNE AARRLLTPKV GYGLEAELRR AGVYVKTVED  240
KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTVVV SDRDGALGRQ  300
ADLWVPWIGV QNGEIGEADL MPEKRRRFDE ETEGESGGDG LFSLSYEENE TAEMSVESDG  360
FGRFNVSAFS EDEWVEDEED DFALSDSDED SDDELSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	322	327	EKRRRF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g14250

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010482547.1	0.0	PREDICTED: uncharacterized protein LOC104761206
TrEMBL	A0A178UA35	0.0	A0A178UA35_ARATH; Uncharacterized protein
TrEMBL	Q9FJ91	0.0	Q9FJ91_ARATH; AT5g52010/MSG15_9
STRING	XP_010482547.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12584	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	0.0	C2H2-like zinc finger protein