PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g14120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 186aa    MW: 22065.5 Da    PI: 9.2739
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g14120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.7e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien + rqvtfskRr g++KKA+ELSvLCda+va i++s++g+lye+ss
  Tp6g14120  9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVLSQSGRLYEFSS 59
               68***********************************************96 PP
2K-box34.58.6e-13871691397
      K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  ++l++e++ + k+i+ L+  qR ++  +     l eLq++e+q+eksl+ +Rs+K el+++q+e+l++ke+el ++ ++Lr++
  Tp6g14120  87 YLQELKKEMDIMVKKIDILEVHQR-FVSHCFYGF-LAELQEIETQIEKSLRVVRSRKGELYVNQLEKLKEKERELLDKRRRLREE 169
                568888899999999999988755.455555554.68*********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.174161IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-28323IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-31375IPR002100Transcription factor, MADS-box
CDDcd002654.64E-40375No hitNo description
PfamPF003192.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.281181IPR002487Transcription factor, K-box
PfamPF014865.4E-1189169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVLSQ SGRLYEFSSS  60
ETEKTIERYG KFSNDYFVPG KSQVELYLQE LKKEMDIMVK KIDILEVHQR FVSHCFYGFL  120
AELQEIETQI EKSLRVVRSR KGELYVNQLE KLKEKERELL DKRRRLREES NIVRLQELLE  180
YDLQIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-17173173MEF2 CHIMERA
6byy_B3e-17173173MEF2 CHIMERA
6byy_C3e-17173173MEF2 CHIMERA
6byy_D3e-17173173MEF2 CHIMERA
6bz1_A3e-17176176MEF2 CHIMERA
6bz1_B3e-17176176MEF2 CHIMERA
6bz1_C3e-17176176MEF2 CHIMERA
6bz1_D3e-17176176MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KRRRL
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g14120
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442695.16e-87PREDICTED: MADS-box protein AGL71-like isoform X2
RefseqXP_010442697.16e-87PREDICTED: MADS-box protein AGL71-like isoform X2
RefseqXP_018454345.17e-87PREDICTED: MADS-box protein AGL71
RefseqXP_018454346.17e-87PREDICTED: MADS-box protein AGL71
RefseqXP_018454347.17e-87PREDICTED: MADS-box protein AGL71
RefseqXP_019087845.17e-87PREDICTED: MADS-box protein AGL71-like isoform X1
SwissprotQ9LT933e-82AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A078HLV82e-83A0A078HLV8_BRANA; BnaA03g12970D protein
TrEMBLA0A397ZUY72e-83A0A397ZUY7_BRACM; Uncharacterized protein
TrEMBLM4EK372e-83M4EK37_BRARP; Uncharacterized protein
STRINGXP_010442695.12e-86(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.13e-73AGAMOUS-like 71