PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g14110
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 25072 Da    PI: 9.8863
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g14110genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien++ rqvtfskRr g++KKA+ELSvLCda+va +ifs++g+ly+++s
  Tp6g14110  9 KKIENTTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQKGRLYDFAS 59
               68***********************************************86 PP
2K-box55.13.2e-191021712493
      K-box  24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                + ++ie+L+  +R+l+G++L  +s+keLq +  q+eksl  +Rs+K +l+ +++e+l+ ke+el+++  +
  Tp6g14110 102 MVEKIEMLEVHNRKLMGQNLAFCSVKELQDIALQIEKSLHIVRSRKAKLYEDEVEKLKAKERELKDDRVR 171
                6689*****999****************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.371161IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-29323IPR002100Transcription factor, MADS-box
CDDcd002654.99E-40376No hitNo description
SuperFamilySSF554554.71E-31387IPR002100Transcription factor, MADS-box
PfamPF003192.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.44192193IPR002487Transcription factor, K-box
PfamPF014864.8E-18102173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVRGKIEIKK IENTTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYDFASS  60
DIQKTIKRYA EYKREHFVAE SHPIEQYVQL GYTGTKEGNG TMVEKIEMLE VHNRKLMGQN  120
LAFCSVKELQ DIALQIEKSL HIVRSRKAKL YEDEVEKLKA KERELKDDRV RLCGRKIIYI  180
YSYILQVGER SMGMTSGSKE KEDVETNLFI GLPKSQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-20176176Myocyte-specific enhancer factor 2B
1tqe_Q6e-20176176Myocyte-specific enhancer factor 2B
1tqe_R6e-20176176Myocyte-specific enhancer factor 2B
1tqe_S6e-20176176Myocyte-specific enhancer factor 2B
5f28_A5e-20176176MEF2C
5f28_B5e-20176176MEF2C
5f28_C5e-20176176MEF2C
5f28_D5e-20176176MEF2C
6c9l_A6e-20176176Myocyte-specific enhancer factor 2B
6c9l_B6e-20176176Myocyte-specific enhancer factor 2B
6c9l_C6e-20176176Myocyte-specific enhancer factor 2B
6c9l_D6e-20176176Myocyte-specific enhancer factor 2B
6c9l_E6e-20176176Myocyte-specific enhancer factor 2B
6c9l_F6e-20176176Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g14110
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443997.11e-120PREDICTED: MADS-box protein AGL72
RefseqXP_019087581.11e-120PREDICTED: MADS-box protein AGL72
SwissprotQ9FLH51e-117AGL72_ARATH; MADS-box protein AGL72
TrEMBLM4EHL71e-117M4EHL7_BRARP; Uncharacterized protein
STRINGXP_010443990.11e-119(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.11e-119MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]