PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g09800
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 478aa    MW: 52859.7 Da    PI: 5.9322
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g09800genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.98.1e-100994711373
       GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                lv+lL+++ ea +  +++  l++ lLarl++l+sp++ ++m+Rlaa+ft++L+    r     +++ + ++ + ++++++++a+++++++sP+++f++lt
  Tp6g09800  99 LVHLLVAAGEASTGANKTraLTRVLLARLKDLVSPSDrTNMERLAAHFTNGLSMLHER-----ANQQRRQHCDVHDQADVISAFQMLQNISPYVNFGYLT 193
                689999999999987777346799********9999989*************998888.....333444444455689********************** PP

       GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                a qaIleav+ e+r+Hi+D+di++G+QW++++qaL sR+   ++ +lRiT+++++++g  s  +++e g+rL+ fAe++g pf+++     ++e++++++
  Tp6g09800 194 ATQAILEAVKYERRIHIVDYDITEGVQWASFIQALVSRNtgISAQHLRITALSRATNGkkSVAAVQEAGRRLTAFAESMGQPFSYHH-CKLDTEAFSPSS 292
                ***************************************544588*********999999999***********************9.688********* PP

       GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                L++ +gEa+++n++l+l r+ +++ ++     ++L+  k+l+Pk+v++v++e+ + +++ Fl rf++ l+ +sa+fdslea+l+ ++++r +vEr+++g+
  Tp6g09800 293 LKLVRGEAVVINCMLHLPRFSHQTPNSLI---SFLSEAKTLNPKLVTLVHEEVGLmGNQGFLYRFMDLLHQFSAIFDSLEAGLSIANQARGFVERVFIGP 389
                ********************977766666...9*********************99******************************************** PP

       GRAS 293 eivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                +++ +++    +   ++ e+++ W ++le+ GFkpv +s  + +qaklll+ ++ dgy+vee  ++ lvlgWk+r+Lvs+S+W
  Tp6g09800 390 WVSGWLTRIAISaDDAEAESFALWPRWLETNGFKPVDVSFANRCQAKLLLSLFN-DGYSVEELgQNGLVLGWKSRRLVSASFW 471
                *****9987765367999************************************.******98789999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.44973452IPR005202Transcription factor GRAS
PfamPF035142.8E-9799471IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.808.0E-5144208No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MNHPYDDFFD LFFSSNTATA ASTSSCVEQH DSVSLDMDWD CDFRDLIESM MSDEGATTES  60
PPMLPCHHGQ EGICNSASTG LSMDDGVGVE ADESKGLRLV HLLVAAGEAS TGANKTRALT  120
RVLLARLKDL VSPSDRTNME RLAAHFTNGL SMLHERANQQ RRQHCDVHDQ ADVISAFQML  180
QNISPYVNFG YLTATQAILE AVKYERRIHI VDYDITEGVQ WASFIQALVS RNTGISAQHL  240
RITALSRATN GKKSVAAVQE AGRRLTAFAE SMGQPFSYHH CKLDTEAFSP SSLKLVRGEA  300
VVINCMLHLP RFSHQTPNSL ISFLSEAKTL NPKLVTLVHE EVGLMGNQGF LYRFMDLLHQ  360
FSAIFDSLEA GLSIANQARG FVERVFIGPW VSGWLTRIAI SADDAEAESF ALWPRWLETN  420
GFKPVDVSFA NRCQAKLLLS LFNDGYSVEE LGQNGLVLGW KSRRLVSASF WASLGSNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-3912347141378Protein SCARECROW
5b3h_A4e-3912347140377Protein SCARECROW
5b3h_D4e-3912347140377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g09800
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120074.10.0PREDICTED: scarecrow-like protein 26 isoform X1
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLA0A3N6U9X00.0A0A3N6U9X0_BRACR; Uncharacterized protein
STRINGBra002894.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.10.0GRAS family protein