PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g06330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 199aa MW: 22171.4 Da PI: 9.5697 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.4 | 1.2e-10 | 16 | 53 | 3 | 40 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i k +tf+kR +g++ KA+ L+ L +a++av++ Tp6g06330 16 ITKKESLATTFTKRSTGLFSKASQLCLLSGAQIAVLVT 53 66667778***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-12 | 6 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.4 | 6 | 52 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-14 | 8 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-5 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-11 | 15 | 56 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.26E-16 | 21 | 86 | No hit | No description |
PRINTS | PR00404 | 6.1E-5 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MVKRGGTKRK IKIEKITKKE SLATTFTKRS TGLFSKASQL CLLSGAQIAV LVTPVSLHSN 60 VSFYTFGHSS VDAVVSAFLN GQRPVPVPEE TRKEKEDIGI FMARKDLGLE LWWEDEGLVK 120 LTNPEDLTDT IKSMSTILTS LKEFRSIGNN SQRDHQHHHE AFVNSETKKS NVVLHHGTQE 180 PADQTLINLQ SIVASLMMI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g06330 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481945.1 | 6e-69 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | A0A0D3DC52 | 1e-64 | A0A0D3DC52_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g092540.1 | 2e-65 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38620.1 | 5e-45 | M-type_MADS family protein |