PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g05320
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 361aa    MW: 41470.4 Da    PI: 8.3333
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g05320genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-05113136123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                y C+ C+++F +++ L +H r  H
  Tp6g05320 113 YFCGVCDRRFYTNEKLINHFRQiH 136
                78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.3E-531113IPR029060PIN domain-like
SuperFamilySSF576674.48E-5112138No hitNo description
PROSITE profilePS5015711.177113141IPR007087Zinc finger, C2H2
PROSITE patternPS000280115136IPR007087Zinc finger, C2H2
CDDcd061671.35E-12168265No hitNo description
PfamPF019364.8E-7173266IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.3E-5198266IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MFTRLVQRIR RSKTPITSLD SIKGFSSLNP KTTIRVAVFW DLDNKPPASF PPFDAAVKLR  60
TAASSLGFVK LMVAYANRHA FSYVPVEVRE ERKERKLLNQ LENKGLVKPP EPYFCGVCDR  120
RFYTNEKLIN HFRQIHETEN QKRMRQIESA KGHQKVRLVA KYSMKMEKYK RAARNIVTPK  180
EGYGLAEELK RAGFWVKMVS DKPEAADRAL KEHMVEVMDK REVECVVLVS DDSGFAEILW  240
EAKERCLRTV VIGDLNEGAL KRVADVAYSW KEVVMGKAKK EVEKVVGKWK DRDVLKKLEW  300
TYDPALEKAR GSSCGVWDYE FDSDDDEIEN GTEVESVETG DGGDWWEMDD EDGVGSSRPC  360
R
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g05320
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396784.20.0uncharacterized protein LOC18014417
TrEMBLA0A1J3JFS60.0A0A1J3JFS6_NOCCA; Uncharacterized protein
STRINGBostr.25463s0088.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein