PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp6g04340

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

G2-like

Protein Properties

Length: 179aa MW: 21260.1 Da PI: 10.9289

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g04340	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.5	1.1e-26	4	58	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r +W+p+LH+rFv+aveqLGG+ +A P +il++m+ +t +h+kSHLQ YR Tp6g04340 4 KQRQKWSPDLHRRFVHAVEQLGGERRASPNKILKFMDGREVTQSHIKSHLQNYRN 58 79****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.188	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.59E-14	2	60	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-23	3	59	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-22	4	60	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-9	6	57	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MPKKQRQKWS PDLHRRFVHA VEQLGGERRA SPNKILKFMD GREVTQSHIK SHLQNYRNKK 60 QMQFVQENRV RQEMRWRQYQ QYLQTYERIR AATWFIPNQR RLQWNINETR TTFLKSRNKN 120 MEVSWKSLFQ SSRAGLNEVG DKNIVVHADD DVAVAGDGAN DSSKGKEKLS LELTLGLKY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g04340

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024009953.1	4e-58	putative Myb family transcription factor At1g14600
TrEMBL	M4EL36	8e-48	M4EL36_BRARP; Uncharacterized protein
STRING	Bostr.7199s0005.1.p	1e-52	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04580.1	1e-35	G2-like family protein