PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g04330
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family G2-like
Protein Properties Length: 331aa    MW: 38478.6 Da    PI: 9.1611
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g04330genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.1e-321568255
    G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               prlrW+++LH++Fv+aveqLGG+++AtPk +l+lm+v gLt++hvkSHLQ+YR+
  Tp6g04330 15 PRLRWSSDLHNSFVQAVEQLGGEHRATPKMVLQLMDVRGLTISHVKSHLQMYRS 68
               8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-301169IPR009057Homeodomain-like
PROSITE profilePS5129410.7091171IPR017930Myb domain
SuperFamilySSF466892.87E-141368IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-241569IPR006447Myb domain, plants
PfamPF002498.7E-71667IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKNPIVRSYV RSKVPRLRWS SDLHNSFVQA VEQLGGEHRA TPKMVLQLMD VRGLTISHVK  60
SHLQMYRSMK LEESMQGSCI YIESQHSAYM YKHMQYMADE ILAKRSVRVT GQVTWWQFQQ  120
YLHNYQRLRG NVNFFQNQQR QEEKMYEKII TFGESSNGSE EVPMDYFTCK SLYESSRVRL  180
NKSRADDDNG EVVCAIEEDG TVVTLSLNSI KASKENRVGQ EMRWKQSQQY LQTYERIRAA  240
TWFIPNQRRL QWNINENRIT FLKSSNKNME VSCKSLFQSS RVGLNEDKNI VIHADDDIAV  300
AGDGANDPLN STEVSKGKDK LSLELTLGLK Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-161670458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-161670458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-161670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-161670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-161670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-161670357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-161670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-161670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-161670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-161670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-161670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-161670458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g04330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0740212e-44AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
GenBankAL1615012e-44AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13.
GenBankCP0026872e-44CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144511.11e-115PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like
RefseqXP_013726299.11e-115protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBLA0A398ACY11e-114A0A398ACY1_BRACM; Uncharacterized protein
STRINGBostr.7199s0006.1.p1e-115(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.11e-35G2-like family protein