PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g02680
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 366aa    MW: 42303.8 Da    PI: 5.2072
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g02680genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.3e-171097194
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
               ffkv+   + ++s+ + +p  + +e   +   +kt +l+ + g  W+v +  ++k++++++++GW +Fv +n L +gDf++F +dg++ fe  +
  Tp6g02680 10 FFKVF--ISRFSSDSMLIPIFYYDELPRV--LPKTAILQGTGGCFWKVAI--KQKGEEVYFGEGWPKFVTDNSLTDGDFLTFVYDGDRIFEVSI 97
               88999..9999*********999888655..999****************..*********************************998885544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-194103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-224103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-14898No hitNo description
PROSITE profilePS5086313.0988101IPR003340B3 DNA binding domain
SMARTSM010193.6E-1610101IPR003340B3 DNA binding domain
PfamPF023622.8E-151095IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-4268358IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-5276354IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAVTDTPPRF FKVFISRFSS DSMLIPIFYY DELPRVLPKT AILQGTGGCF WKVAIKQKGE  60
EVYFGEGWPK FVTDNSLTDG DFLTFVYDGD RIFEVSIYGL DGCKEARAVT EVEDDEEDSI  120
CSLSSDDRDT SSEFEMANTE HRRKNKGKSK VEVVDDSDDE KDSVYSLSSE DTETKTCSKF  180
KMPNTIPRSK NKGKKKQEVV ESSDEDTDSD YTEEFGRLDL EEDSNSESSY APDCEDTATD  240
VKPKVRNPKK KVKTIIKNPE AYLDDPKNIH FETGVKNRKY ELLVHAQLVK DYCLRFRDYI  300
CYIDPKGKLV AKTAKWKDQR VCIKRWIRIC ERNKLKKQDR VLCELLREKD LVYAVKIHII  360
RGEYLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-17910310104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g02680
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396490.10.0B3 domain-containing protein At4g34400
SwissprotQ9SZ051e-135Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLV4LDS20.0V4LDS2_EUTSA; Uncharacterized protein
STRINGXP_006396490.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-119B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]