PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g02590
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 409aa    MW: 44977.5 Da    PI: 9.2722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g02590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0584106123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  Tp6g02590  84 FVCEICNKGFQRDQNLQLHRRGH 106
                89*******************88 PP
2zf-C2H212.80.00035161183123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H +++
  Tp6g02590 161 WKCEKCSKFYAVQSDWKAHTKVC 183
                58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-583106No hitNo description
PROSITE profilePS5015710.94984106IPR007087Zinc finger, C2H2
SMARTSM003550.01784106IPR015880Zinc finger, C2H2-like
PfamPF121716.2E-584106IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355290126156IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.01E-5156181No hitNo description
SMARTSM00355180161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDMFSSRNCS YKPSSLSAEA SASSGNTLSA IQDFNGFNSV IYSRLCTHTE TQKTKKRRGV  60
PGNPDPDAEV IALSPKTLLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNSKEQ  120
QKKKVYVCPE TNCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKFY AVQSDWKAHT  180
KVCGTREYRC DCGTLFSRKD SFITHRAFCD ALAEESARII STSPSNLTSP NPNFQDRHFM  240
LNKSSSSSLL FTSPPYVNQP QSSSVASLSS AAALSATALL QKATALSSGA FGSGGQTQSI  300
GHHRHLTTVN ELLGAGQVMM TSSSSSEYDQ LVVDGLTSTW QKADRLTRDF LGLTGPGVHV  360
SVRPGDMLEY AGGGMAFPMS AYDTESHNHE SSSSFQKAYE VGFSGPHNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-36157226372Zinc finger protein JACKDAW
5b3h_F5e-36157226372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g02590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619493.10.0PREDICTED: protein indeterminate-domain 12
RefseqXP_013674575.10.0protein indeterminate-domain 12
SwissprotO227590.0IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A0D3ASE20.0A0A0D3ASE2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DPP50.0A0A3P6DPP5_BRAOL; Uncharacterized protein
STRINGBostr.2983s0191.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.10.0indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]