PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g01610
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 477aa    MW: 52880.6 Da    PI: 6.5564
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g01610genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64e-31233292159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Tp6g01610 233 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 292
                58*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-33218294IPR003657WRKY domain
SuperFamilySSF1182908.37E-28226294IPR003657WRKY domain
PROSITE profilePS5081128.908228294IPR003657WRKY domain
SMARTSM007741.6E-37233293IPR003657WRKY domain
PfamPF031061.5E-26234292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEEHSQDRRE IEFLHSGEFL RRDSISKDQQ SNESPVEYDH HKPSIKEVDF FAAKSQPYDL  60
GHMRTTVVGS SGFNDESILE DSRLGTSCVA GDDKTKTQIS RLNVELERLH EENHKLKHLL  120
DEISKSYNDL QSRFLLARET QVEGLQQHED TLQAVFAQGL ENRRPMDMNN EMSGTTLKRR  180
SPDDRDLHEA SPKPPRLDQN NSDKHEEQQN PHDQLPFRKA RVSVRARSDT TTVNDGCQWR  240
KYGQKMAKGN PCPRAYYRCT MAVGCPVRKQ VQRCAEDTTI LTTTYEGNHN HPLPPSATAM  300
AATTSAAAAM LLSGSTISNI HQTLCTPSAT SSSSFYNNFP YTSTIATLSA SAPFPTITLD  360
LTNPPRPLQP PLPPQFLSQY GPTAFLTNAR SISNNNNTQL LLPNLLGPQA PPHDMVDTVR  420
AAIAMDPNFT AALAAAISNI IGGGNHNNNN NNDNNKVDSK NGDSPQLPQS CTTFSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22220295175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g01610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609023.10.0PREDICTED: probable WRKY transcription factor 47
RefseqXP_013722767.10.0probable WRKY transcription factor 47
SwissprotQ9ZSI70.0WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A0D3DZW60.0A0A0D3DZW6_BRAOL; Uncharacterized protein
STRINGBo9g004230.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.10.0WRKY family protein