PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g00990
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 360aa    MW: 38994.1 Da    PI: 7.4047
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g00990genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.13.3e-22244307164
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                eke+kre+rkq+NRe+ArrsR+RK+ae+eeL  kv++L aeN++L+++l +l++e++kl+ e+e
  Tp6g00990 244 EKEVKREKRKQSNRESARRSRLRKLAETEELSVKVDALVAENMSLRSKLGQLNDESEKLRLENE 307
                89*********************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.1E-31194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.7E-15128227No hitNo description
Gene3DG3DSA:1.10.880.107.5E-5214261IPR008917Transcription factor, Skn-1-like, DNA-binding domain
SMARTSM003382.2E-19244308IPR004827Basic-leucine zipper domain
PfamPF001705.5E-21244306IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.484246309IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-10247303No hitNo description
CDDcd147022.04E-18249298No hitNo description
PROSITE patternPS000360251266IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-11262303No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGSNEEGKST KSDKPSQAAP PEQGNVHVYH HDWAAMQSYY GPRVAIPQYY NANVAPGHAP  60
PPYMWGSPSP MMAPYGAPYP PFCPPGGVYA HPGVQMGSQL QGPVSQATPV VTTPLNMEAP  120
ANSPGDTDQG FMKKLKEFDG LAMSISNNKV GSAEHSSEPR NSQSSENDDS SNGSDGNTTG  180
GEQSRRKRSR EGSPTNDGKP SSKSNPPHRD ANEKPAATMG TLVMPTAMDF PQPCHGAPHE  240
VWNEKEVKRE KRKQSNRESA RRSRLRKLAE TEELSVKVDA LVAENMSLRS KLGQLNDESE  300
KLRLENEALL DQLKAAQSQA TGKTENLISR VDKNSSVSSS KNVEHQLLHV TLRTDSVAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260266RRSRLRK
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g00990
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY169530.0Y16953.1 Sinapis alba mRNA for G-box binding factor 2A.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396298.10.0G-box-binding factor 2
SwissprotP427750.0GBF2_ARATH; G-box-binding factor 2
TrEMBLV4MYT20.0V4MYT2_EUTSA; Uncharacterized protein
STRINGXP_006396298.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-143G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]