PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g00850
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 321aa    MW: 35829.7 Da    PI: 9.0217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g00850genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.6e-1469113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
        Tp6g00850  69 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 113
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1763119IPR009057Homeodomain-like
PROSITE profilePS5129415.664118IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-766119IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-1867116IPR006447Myb domain, plants
SMARTSM007171.3E-1168116IPR001005SANT/Myb domain
PfamPF002492.2E-1269113IPR001005SANT/Myb domain
CDDcd001673.86E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVSVNPRPAE GFPFFDPVSM SLPGFNPDSD GFGLTPVSTM PITGRSETSS FSEDHTTKIR  60
KPYTIKKSRE NWTEQEHDKF LEALHLFDRD WKKIEAFVGS KTVVQIRSHA QKYFLKVQKS  120
GTNEHLPPPR PKRKASHPYP QKAPQNVAVT PLVIGSLPAS NAMLLEPGYF YSPDSQSLLG  180
NPAVCAPSSS SRTHESTNPP KPMIEVEEEP GVSATALPKN HCYGINSKEA TRRVPAVPEP  240
SDEESCRKPH RVMPNFAEVY SFIGSVFDPN KSGHLQRLKQ MDPINMETVL LLMRNLSVNL  300
TSPEFAEERK LISSYNTKAL K
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g00850
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396282.10.0protein REVEILLE 5 isoform X1
SwissprotC0SVG51e-169RVE5_ARATH; Protein REVEILLE 5
TrEMBLV4KIR60.0V4KIR6_EUTSA; Uncharacterized protein
STRINGXP_006396282.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.21e-172MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]