PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g00710
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 801aa    MW: 87658.8 Da    PI: 6.306
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g00710genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.8e-21131186156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Tp6g00710 131 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 186
                688999***********************************************999 PP
2START208.72.2e-653215411206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 
                ela++a++elvk+a +eep+Wvks     +++n++e++++f+++k     +ea+r+sgvv+ ++  lve+l+d++ +W+e+++    +a+t++vis g  
  Tp6g00710 321 ELALTAMDELVKLAHSEEPLWVKSLdgerDELNQEEYMRTFSSTKPtgLVMEASRTSGVVIINSLALVETLMDSN-RWTEMFPcnvaRATTTDVISGGma 419
                5899*************************************99999999**************************.************************ PP

                ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
      START  89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                    galql++aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++  s  ++R  +lpSg++++++sng+skvtwveh++++++++h l+r
  Tp6g00710 420 gtrnGALQLINAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDTVRENSGgSTVIIR--RLPSGCVVQDMSNGYSKVTWVEHAEYDENQIHHLYR 517
                ******************************************************75555555..************************************ PP

                HHHHHHHHHHHHHHHHHTXXXXXX CS
      START 183 slvksglaegaktwvatlqrqcek 206
                +l++sgl +g ++wvatlqrqce+
  Tp6g00710 518 PLLRSGLGFGSQRWVATLQRQCEC 541
                **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-20118188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-22119188IPR009057Homeodomain-like
PROSITE profilePS5007117.297128188IPR001356Homeobox domain
SMARTSM003899.5E-18129192IPR001356Homeobox domain
CDDcd000861.37E-18130188No hitNo description
PfamPF000462.0E-18131186IPR001356Homeobox domain
PROSITE patternPS000270163186IPR017970Homeobox, conserved site
PROSITE profilePS5084844.5312544IPR002913START domain
SuperFamilySSF559613.02E-30316541No hitNo description
CDDcd088751.92E-112316540No hitNo description
PfamPF018522.3E-58321541IPR002913START domain
SMARTSM002344.4E-42321541IPR002913START domain
SuperFamilySSF559616.87E-22560785No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MNFGSLFDNT TGGGPTGARI LSGLTYGNHS TASTVIPGGA MAQVAAASLF SPPVTKSVYS  60
SSGLSLALEQ PERGTNRGEA SMRNNNGGGD NFDGSANRRS REEEHESRSG SDNVEGISGE  120
DQDADDKPPR KKRYHRHTPQ QIQELESMFK ECPHPDEKQR LELSKRLCLE TRQVKFWFQN  180
RRTQMKTQLE RHENALLRQE NDKLRAENMS IREAMRNPIC TNCGGPAMLG DVSLEEHHLR  240
IENARLKDEL DRVCNLTGKF LGHHHHHNHT SSLELAVGTN HNGNFAFPPD FGGGGCLPPP  300
PQQQQQSTMI NGIDQRSVLL ELALTAMDEL VKLAHSEEPL WVKSLDGERD ELNQEEYMRT  360
FSSTKPTGLV MEASRTSGVV IINSLALVET LMDSNRWTEM FPCNVARATT TDVISGGMAG  420
TRNGALQLIN AELQVLSPLV PVRNVNFLRF CKQHAEGVWA VVDVSIDTVR ENSGGSTVII  480
RRLPSGCVVQ DMSNGYSKVT WVEHAEYDEN QIHHLYRPLL RSGLGFGSQR WVATLQRQCE  540
CLAILMSSSV TSHDNTSITP GGRKSMLKLA QRMTFNFCSG ISAPSVHSWS KLTVGNVDPD  600
VRVMTRKNVD DPSEAPGIVL SASTSVWLPA SPQRLFDFLR NERMRCEWDI LSNGGPMQEM  660
AHIAKGQDQG NSVSLLRSNP MNANQSSMLI LQETCIDASG ALIVYAPVDI PAMHVVMNGG  720
DSSYVALLPS GFAVLPDGGI EGGSGDVEQR PVGGGSLLTV AFQILVNNLP TAKLTVESVE  780
TVNNLISCTV QKIRAALQCE S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g00710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532530.0AK353253.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-B24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396268.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2
RefseqXP_020878511.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1J3DE850.0A0A1J3DE85_NOCCA; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
STRINGBostr.10064s0036.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]