 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp6g00520 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
bHLH |
| Protein Properties |
Length: 562aa MW: 64059.2 Da PI: 7.1309 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp6g00520 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 14.7 | 5.4e-05 | 379 | 416 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
R++ N++f+ Lr ++P + ++K +iL +++Y+++L+
Tp6g00520 379 RRKENEKFSVLRAMVPVvN------EVNKESILNNTIKYLQELE 416
6777*************55......8***************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 562 aa
Download sequence Send
to blast |
MSLTMADGVE AARGRSKRKN SLLRAQLAVA VRSVQWSYAI FWSSSPTQSG VLEWGEGCYN 60
GDMKKRKKRY EAHYKYGLQR SNQLRKIYLC MLEGDSSTTI STTHDVDDHS DDGDHHNCNS 120
TSMMLSPDDL SDEEWYYLVS MSYVFSPSQC LPGRALATGE TIWLCNAQYA ENKLFSRSLL 180
ARSASIQTVV CFPYLDGVVE LGVTELISED HSLLQHIKSC LLETSKPDCS SKNFSVHQDN 240
DDEKNKMKIK ISDGNSMLQE NHQIQFSSSD LKFDEDLHYK RTVSTVLKYA TDKSKRNDNN 300
THHRQPDLVS SNSGSSFLQW KQREQPNSNL LQKHSNLQAL SQKVLRKILH DIPLMHALDT 360
KRMFPNQIFG LNQDDPSDRR KENEKFSVLR AMVPVVNEVN KESILNNTIK YLQELEERVE 420
ELESCMGSVN FVERKRKTTK SLNDSVLIEE TSGNYEDNTK IDGYSGETEQ VSNFRDQTHL 480
RVKLKETEVV IEVKCSYRDY IVADIMETLS KLHMDAFSVR SHTLDGSLTL NLKAKLRGAA 540
VASVGMIKRE LRRVIGEGMR IT
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 7e-14 | 24 | 221 | 12 | 192 | Transcription factor MYC3 |
| 4rqw_B | 7e-14 | 24 | 221 | 12 | 192 | Transcription factor MYC3 |
| 4rs9_A | 7e-14 | 24 | 221 | 12 | 192 | Transcription factor MYC3 |
| 4yz6_A | 7e-14 | 24 | 221 | 12 | 192 | Transcription factor MYC3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493664 | 0.0 | AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480. |
| GenBank | AF251697 | 0.0 | AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds. |
