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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp6g00280 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
LBD |
| Protein Properties |
Length: 229aa MW: 23956.1 Da PI: 7.8945 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp6g00280 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 129.7 | 1.3e-40 | 18 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
+C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+k+l+++pe++r da+ s+++eA+ar+rdP+yG+v++i +lqqq+ +l++el+++++
Tp6g00280 18 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKVLHHVPEHKRADAVVSMCFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYVQA 117
7***********************9989*********************************************************************998 PP
DUF260 100 e 100
+
Tp6g00280 118 H 118
6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010089 | Biological Process | xylem development |
| GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MSSSGSPSSS GGGGGGGPCG ACKFLRRKCV AGCIFAPYFD SEQGAAHFAA VHKVFGASNV 60
SKVLHHVPEH KRADAVVSMC FEAQARLRDP IYGCVSHIVS LQQQVVSLQT ELSYVQAHLA 120
TLELPQPPPA APVTSSGSPP PLSISDLPTL TPSMYDLSPI FEPMSSTWAM QQQPRPSSDH 180
LFGVPSSSSI GGGGELQALA REFLHGGQMP AHQPPRGTGG SARTVIKRE
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB473852 | 0.0 | AB473852.1 Arabidopsis thaliana ASL19 mRNA for ASYMMETRIC LEAVES2-like 19 protein, complete cds. |
| GenBank | AF432232 | 0.0 | AF432232.1 Arabidopsis thaliana LOB DOMAIN 30 (LBD30) mRNA, complete cds. |
| GenBank | BT026407 | 0.0 | BT026407.1 Arabidopsis thaliana At4g00220 mRNA, complete cds. |
| GenBank | DQ446787 | 0.0 | DQ446787.1 Arabidopsis thaliana clone pENTR221-At4g00220 LOB domain protein 30/lateral organ boundaries domain protein 30 (At4g00220) mRNA, complete cds. |
