PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g00110
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 397aa    MW: 42894.5 Da    PI: 8.4817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g00110genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.7e-16209254555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Tp6g00110 209 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 254
                9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-18202265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.61E-17209258No hitNo description
Gene3DG3DSA:4.10.280.102.0E-17209263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-13209254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-18210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSQRVPNCHI DDTPAATVRS TKAADIPMVD YEVAELTWEN GQLGLHGLGP PRVPAPSKYS  60
TGAGGTLESI VDQATRFPNP KPTVPWFHHR SSRGGMDALV PEQQSQPATH VGSCSDGHPM  120
AGGGKRARVA PERSASGSQR LTMDTYGFTS TSLDDNSSSG GKPCTKTTTI DDHDSVCHSR  180
SQMDEEEEKQ AAGGKSSVST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL VPNSSKTDKA  240
SMLDEVIEYL KQLQAQVSMM SRMNMPSMML PMAMQQQQQQ QLQLSLMSSS MGLGLGMGMP  300
GLGLLDLNSM NRAAAAAAAT APNIHANMMP NPFVPMTSPS WDASSSTDTR FQSPLIPDPM  360
AAFLACSSQP TTMEAYSRMA ALYQQMQQQL PPPSNPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212217ERKRRD
2213218RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g00110
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172290.0AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259710.0BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396203.10.0transcription factor UNE10
SwissprotQ8GZ380.0UNE10_ARATH; Transcription factor UNE10
TrEMBLV4MYL20.0V4MYL2_EUTSA; Uncharacterized protein
STRINGXP_006396204.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-179bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]