PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g33630
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family STAT
Protein Properties Length: 669aa    MW: 75851.4 Da    PI: 5.1139
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g33630genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT1772.8e-552213351114
       STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfle 99 
                ldvvl+na+gqpv+kdvevvasLly dsg+ ve + ++aeapL isy+Gvefs+ drp+kll+G++sfk+kisqLss++dnrLf+ikfeip+ + ypfl+
  Tp5g33630 221 LDVVLSNAIGQPVHKDVEVVASLLYVDSGTRVEAKmNEAEAPLSISYEGVEFSADDRPIKLLNGCSSFKIKISQLSSNSDNRLFCIKFEIPNANGYPFLQ 320
                8*****************************998554**************************************************************** PP

       STAT 100 avskpirCisrsrnt 114
                a+++p+rCis + + 
  Tp5g33630 321 ALTNPVRCISVNPKR 335
                **********99764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498997.44E-729166IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103383.96E-66564669No hitNo description
Gene3DG3DSA:3.30.505.104.0E-8571633IPR000980SH2 domain
SuperFamilySSF555503.37E-10572661IPR000980SH2 domain
PROSITE profilePS500019.796575669IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MAGASTIETD KYSVLEDFKV DVEVEDEEYE TFSLCFWIYL LNSTTFPSTI IRQVHSDMSV  60
SAPFLVLDEN KKMMLLPLIL LHKEAPDPVD TSSWTQVPNV STKSEFPLEK WVHFGCEVSR  120
NCMRLLIDGE IVGEQLLTSF LTKNNNPECP RKISLFSVGG DGYSVQGFIQ CAEVLPANGH  180
VEYHYMKEPP LLLSVDKSSS SGVDLDDDGV WKASCREFVS LDVVLSNAIG QPVHKDVEVV  240
ASLLYVDSGT RVEAKMNEAE APLSISYEGV EFSADDRPIK LLNGCSSFKI KISQLSSNSD  300
NRLFCIKFEI PNANGYPFLQ ALTNPVRCIS VNPKRLSHDH HHPLSTESLD LLHSTSSVKR  360
ARLGKESVSG SEESYQQCNS HPQISGQFEN RNGVSMHHEE DNSSTDSENS EMRETVLMRY  420
TISDSTVFRY CLGNLTERSL LLKEITNNSS DDEVFEFANQ VSLYSGCSHH CYQINMAKKL  480
IDEGTNVWIL ISRNNQHVHW DNVVNEIEEH FMRISKCSSR SLTHQDFDLL RRISGCYEYI  540
TQENFEKMWC WLFPVASSIS WGLINGMWRS SSPKWVEGFI TKEDAEHSLE GQEPGTFILR  600
FPISRSWPHP DAGSLVVTYV GHDYSLHHKQ LKIDHICQSS ERYMDAKPLQ DMLLAEPELS  660
RLGRIIRSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g33630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215320.0AK221532.1 Arabidopsis thaliana mRNA for Hypothetical protein, complete cds, clone: RAFL07-69-D06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177975.30.0SH2 domain protein B
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLD7KVC10.0D7KVC1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__2148__AT1G78540.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]