PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g33120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 304aa    MW: 34519.6 Da    PI: 4.5758
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g33120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.62.5e-26958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtfskRrng++KKA+ELS+LCd+++a+++fs++++l  +s
  Tp5g33120  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFS 58
               79******************************************998776 PP
2K-box20.71.7e-08971711084
      K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                 +++ e+l+qe+ kL++++++ ++e+R++  +     +++e +  e+qL + l+++ ++++++l +q++      
  Tp5g33120  97 INSDVEELEQEVYKLQQQLHMAEEELRKYEPDPTRFTTMEECETCEKQLMDTLTRVNQRRERILSDQLSSYEASA 171
                567899*************************************************************99876555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.805161IPR002100Transcription factor, MADS-box
CDDcd002654.42E-34275No hitNo description
SuperFamilySSF554559.55E-29284IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.5E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-243859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-5100169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK  60
TRIEDVFTRF INLPDQEREK KFMSRDIALQ LTNPAAINSD VEELEQEVYK LQQQLHMAEE  120
ELRKYEPDPT RFTTMEECET CEKQLMDTLT RVNQRRERIL SDQLSSYEAS AIQHQNMGGP  180
FVNDDVGGWL AENGPNQAQL FDASAHSSMY ETLLQASSSS SNQNNNMGAC HVSNPNGDMF  240
QEWAQAYAST TGLNPSALFP PMQPQHGVVG PNMEETEIPV TTREAQADHE VSDYDIRMPQ  300
LSSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-16154154Myocyte-specific enhancer factor 2B
1tqe_Q6e-16154154Myocyte-specific enhancer factor 2B
1tqe_R6e-16154154Myocyte-specific enhancer factor 2B
1tqe_S6e-16154154Myocyte-specific enhancer factor 2B
6byy_A5e-16154154MEF2 CHIMERA
6byy_B5e-16154154MEF2 CHIMERA
6byy_C5e-16154154MEF2 CHIMERA
6byy_D5e-16154154MEF2 CHIMERA
6c9l_A6e-16154154Myocyte-specific enhancer factor 2B
6c9l_B6e-16154154Myocyte-specific enhancer factor 2B
6c9l_C6e-16154154Myocyte-specific enhancer factor 2B
6c9l_D6e-16154154Myocyte-specific enhancer factor 2B
6c9l_E6e-16154154Myocyte-specific enhancer factor 2B
6c9l_F6e-16154154Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g33120
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390037.10.0agamous-like MADS-box protein AGL66
SwissprotQ1PFC20.0AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLV4KJ820.0V4KJ82_EUTSA; Uncharacterized protein
STRINGXP_006390037.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-179AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]