PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g33100
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28082 Da    PI: 6.1728
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g33100genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.15.7e-24958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krie ++nrq+t+skR++g+lKKA+ELS+LCd++ a+++fs++++l  +s
  Tp5g33100  9 KRIEKSTNRQITYSKRKKGLLKKAYELSTLCDIDLALLMFSPSDRLCLFS 58
               79*****************************************9997765 PP
2K-box15.47.9e-071251921178
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                +++ e+l+qe+  L++++   ++e+R++  + +   s+ke++  e++L + l+ + +++++ll ++ e
  Tp5g33100 125 HSDVEELEQEVCILQQQLLISEEELRKFEPDPVRFTSMKEIEACETHLLNTLSCVVQRREHLLSKSCE 192
                5678899999999999999999*****************************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.819161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-26281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-21323IPR002100Transcription factor, MADS-box
PfamPF003194.8E-221055IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRVKLELKR IEKSTNRQIT YSKRKKGLLK KAYELSTLCD IDLALLMFSP SDRLCLFSGQ  60
TRIEDVFARY INLPDQEREN AIVFPDQSKR QSILNKEYLL RTLEQLKTEN DMAFQINEPR  120
PEAIHSDVEE LEQEVCILQQ QLLISEEELR KFEPDPVRFT SMKEIEACET HLLNTLSCVV  180
QRREHLLSKS CEAPPSTTTK QSMGNFLLND AVGGWGPEVE PNQAHIIPYP AHHSNQSNHL  240
RSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A8e-17191192MEF2 CHIMERA
6bz1_B8e-17191192MEF2 CHIMERA
6bz1_C8e-17191192MEF2 CHIMERA
6bz1_D8e-17191192MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g33100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0121281e-173BT012128.1 Arabidopsis thaliana At1g77950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889727.11e-140agamous-like MADS-box protein AGL66
SwissprotQ1PFC21e-106AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLD7KV591e-139D7KV59_ARALL; Transcription factor
STRINGfgenesh2_kg.2__2089__AT1G77950.11e-140(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.21e-132AGAMOUS-like 67
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]