PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g32000
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 611aa    MW: 68432.6 Da    PI: 5.8169
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g32000genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.11.2e-2860144187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e g+ r++k+Ckek+en+ k++k++keg+ ++++++  t+++fdqlea
  Tp5g32000  60 RWPRQETLALLKIRSDMGIAFRDASVKGPLWEEVSRKMAELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 144
                8********************************************************************975544..6*******85 PP
2trihelix105.24.6e-33412497187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k e+ aLi++r++++++++++  k+plWee+s+ mr+ gf+r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Tp5g32000 412 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 497
                8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1257119IPR001005SANT/Myb domain
CDDcd122036.84E-2259124No hitNo description
PROSITE profilePS500906.95759117IPR017877Myb-like domain
PfamPF138376.0E-1859145No hitNo description
SMARTSM007170.0017409471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-4411468IPR009057Homeodomain-like
PfamPF138373.4E-22411498No hitNo description
PROSITE profilePS500907.108411469IPR017877Myb-like domain
CDDcd122031.67E-26412476No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MMQLGGTTTT TTATASTAAT AEAPPQSNDS AATEAAAAAA AVGAFEVSEE MSDRGFGGNR  60
WPRQETLALL KIRSDMGIAF RDASVKGPLW EEVSRKMAEL GYIRNAKKCK EKFENVYKYH  120
KRTKEGRTGK SEGKTYRFFD QLEALETQST SSLHHQQQQQ PQPLRPQNNN NSSMFSTPPP  180
VTTVMPPITN ITLPSSSLPP YTQPVNISSF PNISGDFLSD NSTSSSSSYS TSSDVEIGGG  240
TTTTRKKRKR KWKDFFERLM KQVVDKQEEL QRKFLEAVEK REHERMVREE SWRVQEIARI  300
NREHEILAQE RSMSAAKDAA VMSFLQKLSE KPNPQGQSMA QPQPQQARSQ MQVNSNSQQQ  360
TTQQQTPQPP PPPLPQPSQP VIPTLDTTKT DNGDQNMTPA SASAAGAASS SRWPKVEIEA  420
LIKLRTNLDS KYQENGPKGP LWEEISAGMR RLGFNRNSKR CKEKWENINK YFKKVKESNK  480
KRPEDSKTCP YFHQLDALYR ERNKFHTNNN IASSSSTSGL IKPDNSVPLM VQPEQQWPPA  540
TTTTTTTTTV VAATAQPDQH PPQPSDQNFD DEEGTDEEEY DDEEDDEENE EEEGGEFELV  600
PSNNNKTTNN L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244249RKKRKR
2244250RKKRKRK
3245250KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g32000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892030.0AC189203.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693759.10.0trihelix transcription factor GT-2-like
RefseqXP_018446335.10.0PREDICTED: trihelix transcription factor GT-2
SwissprotQ391171e-146TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLD7KTX90.0D7KTX9_ARALL; Uncharacterized protein
STRINGscaffold_202643.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.10.0Trihelix family protein