PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g31460

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

FAR1

Protein Properties

Length: 731aa MW: 84456.7 Da PI: 7.3956

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g31460	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.9	1.3e-26	12	97	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++ra+ ++gCka+++vk++ dgkw+v+++++eHnHel p Tp5g31460 12 FYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRPDGKWYVYSFVKEHNHELLP 97 9**************************************99887....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-24	12	97	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-28	211	303	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.794	489	525	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-9	495	523	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	500	527	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MEFETHEDAY LFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP 60 RASPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHELLPEQA HFFRSHRSTE PANSDSRLRR 120 KKNNPLAASK HLSAYHDLSF LDGYMRNQHD KGRRLIIDTG DAQILLEFLM RMQEENPKFF 180 YAVDFSEDHL LRNVFWVDAK GIEDYKSFSD VVSFDTTYFV SKYKIPLVLF VGVNHHVQPV 240 LLGCGLIADE TVYTYVWLMQ SWLVAMGGST PKVMLSDQNN AMKAAIAAVL PETRHCYCLW 300 HVLDRLPRNL DYWSMWQDTF MKKLFKCIYR SWSEEEFNRR WLKLIDKFHL RDVQWMRSLY 360 EERMFWAPTF MRGVTFAGLS TRYRSESINS LFDRYVQAET SLKEFLEGYG LMLEDRYEEE 420 AKADFDAWHE APELKSPSPF EKQMLLVYTH EIFRKFQIEV LGAAACHLTK ESEEGTTYSV 480 KDFEDDQKYL VDSNESKSDI YCSCRSFEYK GYLCRHAIVV LQMSGVFTIP INYVLQRWTN 540 AARNKHQISG NLELVQSNIR RFNDLCRRAI ILGEEGSLSQ ESYDVAMFAM KEALKQCAIK 600 VNTIEHPARC EEAAIQPGDP VQEENQYGST SKQIGPEPNM HAGNASGQIE TRRENRSSLN 660 NTSKKAKHVM QSGTVGEGSQ EGFQHMAAPR PFQAGLAAQF HNTVPAVFQN VIPTEFHNIP 720 ATNMHQNNPP G

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MEFETHEDAY LFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP  60
RASPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHELLPEQA HFFRSHRSTE PANSDSRLRR  120
KKNNPLAASK HLSAYHDLSF LDGYMRNQHD KGRRLIIDTG DAQILLEFLM RMQEENPKFF  180
YAVDFSEDHL LRNVFWVDAK GIEDYKSFSD VVSFDTTYFV SKYKIPLVLF VGVNHHVQPV  240
LLGCGLIADE TVYTYVWLMQ SWLVAMGGST PKVMLSDQNN AMKAAIAAVL PETRHCYCLW  300
HVLDRLPRNL DYWSMWQDTF MKKLFKCIYR SWSEEEFNRR WLKLIDKFHL RDVQWMRSLY  360
EERMFWAPTF MRGVTFAGLS TRYRSESINS LFDRYVQAET SLKEFLEGYG LMLEDRYEEE  420
AKADFDAWHE APELKSPSPF EKQMLLVYTH EIFRKFQIEV LGAAACHLTK ESEEGTTYSV  480
KDFEDDQKYL VDSNESKSDI YCSCRSFEYK GYLCRHAIVV LQMSGVFTIP INYVLQRWTN  540
AARNKHQISG NLELVQSNIR RFNDLCRRAI ILGEEGSLSQ ESYDVAMFAM KEALKQCAIK  600
VNTIEHPARC EEAAIQPGDP VQEENQYGST SKQIGPEPNM HAGNASGQIE TRRENRSSLN  660
NTSKKAKHVM QSGTVGEGSQ EGFQHMAAPR PFQAGLAAQF HNTVPAVFQN VIPTEFHNIP  720
ATNMHQNNPP G

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g31460

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221406	0.0	AK221406.1 Arabidopsis thaliana mRNA for putative phytochrome A signaling protein, complete cds, clone: RAFL25-49-E06.
GenBank	BT010456	0.0	BT010456.1 Arabidopsis thaliana far-red impaired response protein -related (At1g76320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020890971.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_020890972.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A087HIV3	0.0	A0A087HIV3_ARAAL; Uncharacterized protein
STRING	Bostr.20129s0070.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]