 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Tp5g30550 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
TALE |
| Protein Properties |
Length: 527aa MW: 59425.6 Da PI: 6.4158 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp5g30550 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 30.9 | 4.7e-10 | 372 | 409 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
Fe ++yp+++e+ LAk++gL+++qV +WF N R +
Tp5g30550 372 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 409
665559******************************88 PP
|
| 2 | BELL | 125.9 | 1.5e-40 | 235 | 306 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
erqelq+kk+kLl++++eVdkrY+qy++q+++++ssFe+vaglg+akpYts+Al++iSrhFrcL+dai+eqi
Tp5g30550 235 ERQELQSKKSKLLTMVDEVDKRYNQYHHQMEALASSFEMVAGLGAAKPYTSVALNRISRHFRCLRDAIKEQI 306
79*********************************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 527 aa
Download sequence Send
to blast |
MAVYYPTTVG MQSLYQESIY LNEQQQQASS SSAASFSDIV SGGGGGGGNC LEIPNSGGGV 60
RNEMVFIPPT SDDVVVTGLN GNVNGTVTVS NNDLSFHGGG LSLSLGNQIQ YHYQNLYNNQ 120
NPSLSDENGK SLSHHHQHHQ SEQIPIPSSG YSNGVGFYNN YRYETSGFVS SVLRSRYLKP 180
TQQLLDEIVS VRKDLKLGDS NKKSKNNDKS QDFTNGSSDN NTENEKLREE LSPSERQELQ 240
SKKSKLLTMV DEVDKRYNQY HHQMEALASS FEMVAGLGAA KPYTSVALNR ISRHFRCLRD 300
AIKEQIQVIR GKLGERESSE EQGERIPRLR YLDQRLRQQR ALHQQLGMVR PAWRPQRGLP 360
ENSVSILRAW LFEHFLHPYP KESEKIMLAK QTGLSKNQVA NWFINARVRL WKPMIEEMYK 420
EEFGDSSELV SNSNQDNKMQ ETSLLKQEDS SSSQQQNHGN NNVPYTSDAE ENLVFADPKP 480
DRATTGDYDS LMSYNGFGVD DYNRYIGLGN QQDGRFSNPH QLHDFVV
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3k2a_A | 4e-16 | 359 | 417 | 5 | 63 | Homeobox protein Meis2 |
| 3k2a_B | 4e-16 | 359 | 417 | 5 | 63 | Homeobox protein Meis2 |
| 4xrm_A | 4e-16 | 359 | 417 | 5 | 63 | Homeobox protein Meis2 |
| 4xrm_B | 4e-16 | 359 | 417 | 5 | 63 | Homeobox protein Meis2 |
| 4xrs_A | 3e-16 | 359 | 416 | 1 | 58 | Homeobox protein Meis1 |
| 4xrs_B | 3e-16 | 359 | 416 | 1 | 58 | Homeobox protein Meis1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF353093 | 0.0 | AF353093.1 Arabidopsis thaliana BEL1-like homeodomain 3 (BLH3) mRNA, complete cds. |
| GenBank | AY062545 | 0.0 | AY062545.1 Arabidopsis thaliana Similar to homeodomain proteins (At1g75410; F1B16.6) mRNA, complete cds. |
| GenBank | AY085278 | 0.0 | AY085278.1 Arabidopsis thaliana clone 142443 mRNA, complete sequence. |
| GenBank | AY598452 | 0.0 | AY598452.1 Arabidopsis thaliana BEL1-like homeodomain 3 protein mRNA, complete cds. |
| GenBank | BT000133 | 0.0 | BT000133.1 Arabidopsis thaliana Similar to homeodomain proteins (At1g75410) mRNA, complete cds. |
