PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g29970
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 271aa    MW: 29381.7 Da    PI: 6.7965
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g29970genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86e-1498142347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+Wk I++ + k Rt  q+ s+ qky
        Tp5g29970  98 PWTEEEHKLFLLGLQKVGKGDWKGISKNFVKSRTSTQVASHAQKY 142
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.33191147IPR017930Myb domain
SuperFamilySSF466894.02E-1793148IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-1794145IPR006447Myb domain, plants
SMARTSM007174.5E-1095145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-1197142IPR009057Homeodomain-like
PfamPF002493.6E-1198142IPR001005SANT/Myb domain
CDDcd001673.03E-998143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MADGSSCSSE STVACVGGGD ISREIMLFGV RVVLDPMRKS VSLNNLSEYE QTEETPKIGG  60
EGGDGQDKNK TSSGYASADD ALPISSSGGS RERKRGVPWT EEEHKLFLLG LQKVGKGDWK  120
GISKNFVKSR TSTQVASHAQ KYFLRRSNLN RRRRRSSLFD MTTETVMSVE EDQMLIQENT  180
SQPSSLVPEI NSFSINPVMQ IFPEFPVPTS GDNASGNQSY GQSSSSTIIN LVPFTFQARP  240
APISLNLSLA SSNLNEPSSS RHSAFNTIGV A
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00236DAPTransfer from AT1G74840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g29970
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302562.21e-139transcription factor MYB1R1
SwissprotQ2V9B02e-57MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLR0IBE61e-136R0IBE6_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0402s0045.1.p1e-140(Capsella grandiflora)
STRINGBostr.3288s0130.1.p1e-140(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.11e-105MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]