PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g27650
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family AP2
Protein Properties Length: 423aa    MW: 48029.2 Da    PI: 7.2416
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g27650genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.7e-16237296155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a+ k++g
  Tp5g27650 237 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDEEEKAARAYDLAAMKYWG 296
                78*******************988886678446*************************98 PP
2AP229.81.5e-09340384255
        AP2   2 gykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV r       W A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Tp5g27650 340 VYRGVtR-------WQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 384
                6777744.......6666555321...6************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.87E-22237306No hitNo description
SuperFamilySSF541712.03E-17237306IPR016177DNA-binding domain
PfamPF008472.7E-12237296IPR001471AP2/ERF domain
SMARTSM003803.6E-30238310IPR001471AP2/ERF domain
PROSITE profilePS5103219.151238304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-16238305IPR001471AP2/ERF domain
PRINTSPR003671.9E-6239250IPR001471AP2/ERF domain
PROSITE profilePS5103215.303334392IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-14339394IPR016177DNA-binding domain
CDDcd000187.02E-22339394No hitNo description
SMARTSM003802.4E-25340398IPR001471AP2/ERF domain
PfamPF008472.8E-4341384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-14342392IPR001471AP2/ERF domain
PRINTSPR003671.9E-6374394IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MNKWLGFSLT PNMRICDRDQ EEDEEEHRHE GNNVFTDQQK ALMPLNSDVW QYDINLDHHH  60
HDEEVPKLED FFSNSHQTEC PPINSHYQTS VNCTTMVNRL SPPGYLLHEQ TVATPQYPNL  120
NPNLSQEYGG SVSVFKSWLR QGTPTFPSYV TEEGSTSNTS NLSHKETDYN SSGSTLFLAM  180
SHGAGSDLIN KLNVSVPVDE PVKVDEKRKR LMGKSQVKEP AAVQPRKSVE SFAQRTSQYR  240
GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR QVYLGGYDEE EKAARAYDLA AMKYWGPTTH  300
LNFPLSNYEK EIEELKNMTR QEFVAMLRRN SSGFSRGASV YRGVTRWQAR IGRVAGNKDL  360
YLGTFSTQEE AAEAYDIAAI KFRGVNAVTN FDISRYDVKR ICSNSTIINS DHAKRSSTSS  420
GAG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g27650
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127942.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A078IIR90.0A0A078IIR9_BRANA; BnaA02g16050D protein
STRINGBra008040.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]