PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g27080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | TCP | ||||||||
Protein Properties | Length: 396aa MW: 41570 Da PI: 8.9953 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.1 | 7.6e-39 | 70 | 167 | 4 | 89 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas......nsssg.......k 89 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ +++ + +s ++ + + Tp5g27080 70 VKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNATLRGGGStifaqpSK--SsssplsfH 167 5899**********************************************************999997774222222222222221111..112233321 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.1E-35 | 74 | 190 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.031 | 74 | 128 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MEIRTNHTSH DRQRDAVATA LTAEAGLQLN SNENPSPGGS VPFVGGISGS TSSSTSTSSG 60 TALAVVKSAV KKPSKDRHTK VDGRGRRIRM PAMCAARVFQ LTRELGHKSD GETIEWLLQQ 120 AEPAIIASTG TGTIPANFST LNATLRGGGS TIFAQPSKSS SSPLSFHSTG MSLYEDSNGT 180 NGSSSSAAVD PSRKLLNAAT AAQNAAVFGF HHQIYPPIMS TERNPTNLAK PYREDYFKES 240 EPSGSSQKPG QFQDQELGPG PGMGRGTANV VPQPMWAVAP GTTNGGSAFW MLPMSGSGGR 300 EQMQQQPAHQ MWAFNPGNYP VGTGRVVTAP MGSMMLGGQQ LGLGVAESNM AAAMRGSRGG 360 DGLAMTLDQH QHQHHQQHQE PSQTQASENG GGDDKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00228 | DAP | Transfer from AT1G72010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g27080 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353239 | 0.0 | AK353239.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-J11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301977.1 | 0.0 | transcription factor TCP22 | ||||
Swissprot | Q9C7G4 | 0.0 | TCP22_ARATH; Transcription factor TCP22 | ||||
TrEMBL | A0A1J3JGG0 | 0.0 | A0A1J3JGG0_NOCCA; Transcription factor TCP22 | ||||
STRING | Bostr.10273s0152.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7053 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 1e-152 | TCP family protein |
Publications ? help Back to Top | |||
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