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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp5g25630 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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| Family |
TALE |
| Protein Properties |
Length: 324aa MW: 36741.1 Da PI: 4.6556 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp5g25630 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 29.1 | 1.7e-09 | 267 | 301 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
k +yp+++++ LA+++gL+++q+ +WF N+R ++
Tp5g25630 267 KWPYPTEADKISLAEETGLDQKQINNWFINQRKRH 301
569*****************************885 PP
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| 2 | ELK | 33.6 | 8.4e-12 | 221 | 242 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
+LK+qLlrK++++++sLk EFs
Tp5g25630 221 DLKDQLLRKFGSHISSLKLEFS 242
6********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009736 | Biological Process | cytokinin-activated signaling pathway |
| GO:0010094 | Biological Process | specification of carpel identity |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MDRMCGFRSA GDYSEKSALM MSSSESLMSP SDYQNLICSS AAGENRLFGS DELFSAALSS 60
EAVSIAPRTR TADQDNFSVG VIKSKISSHP LYPRLLQTYI DCQKVGAPME IACLLEEIQR 120
ENDVYKRDVA PVSCFGADPE LDEFMETYCD ILVKYKSDLA RPFDEATTFL NKIEMQLQDL 180
CTGPASARGL SDDGAVSSDE ELREGDDVAT QDSQQRSNDR DLKDQLLRKF GSHISSLKLE 240
FSKKKKKGKL PREARQALLD WWNVHYKWPY PTEADKISLA EETGLDQKQI NNWFINQRKR 300
HWKPSEHMPF AVMDDSSETF FTEE
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| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | ATU14175 | 0.0 | U14175.1 Arabidopsis thaliana clone KNAT2 knotted-like homeobox protein gene, partial cds. |
| GenBank | X81353 | 0.0 | X81353.1 A.thaliana mRNA for ATK1 protein. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Zhang XL,Yang ZP,Zhang J,Zhang LG
Ectopic expression of BraYAB1-702, a member of YABBY gene family in Chinese cabbage, causes leaf curling, inhibition of development of shoot apical meristem and flowering stage delaying in Arabidopsis thaliana.
Int J Mol Sci, 2013. 14(7): p. 14872-91
[PMID:23863694] - Kuijt SJ, et al.
Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
Plant Physiol., 2014. 164(4): p. 1952-66
[PMID:24532604] - Scofield S,Dewitte W,Murray JA
STM sustains stem cell function in the Arabidopsis shoot apical meristem and controls KNOX gene expression independently of the transcriptional repressor AS1.
Plant Signal Behav, 2018.
[PMID:24776954] - Lee JE,Lampugnani ER,Bacic A,Golz JF
SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis.
Plant J., 2014. 80(1): p. 122-35
[PMID:25060324] - Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
[PMID:26108442] - Li Z, et al.
Transcription factors AS1 and AS2 interact with LHP1 to repress KNOX genes in Arabidopsis.
J Integr Plant Biol, 2016. 58(12): p. 959-970
[PMID:27273574] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
Plant J., 2016. 88(3): p. 437-451
[PMID:27402171]
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