PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WRKY

Protein Properties

Length: 378aa MW: 42286 Da PI: 7.7254

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g24930	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	85	6.9e-27	196	255	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++ +tYeg+H+h+ Tp5g24930 196 NDGCQWRKYGQKTAKANPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGNHDHP 255 8*************************99******934578899********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-27	180	257	IPR003657	WRKY domain
PROSITE profile	PS50811	24.707	190	257	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-24	191	257	IPR003657	WRKY domain
SMART	SM00774	6.6E-33	195	256	IPR003657	WRKY domain
Pfam	PF03106	4.9E-25	196	255	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MIKEETDSCV HPFDGVMAES DKEVELDATK AKVDKVREEN KKLKLLLTTT LTDYNSLQMH 60 VSNVIRRQQE ASMEQDRNGH EDFGVDISLR LGRSDPNISK KEDEIVKISV DKEGSDKKRV 120 RIQSCEDQKT DRTMKLDYLS MDVKSKTAEN KCVSSMKDVK TSRNEDHQEV FEGREQPGSK 180 KTRVCVKAPC EDPSINDGCQ WRKYGQKTAK ANPLPRAYYR CSMSSNCPVR KQVQRCGEDD 240 TSAYMTTYEG NHDHPLPMEA THMAAGTSAA ASLLQCGSSS SSSSSSSLSY FFPFHHFSVS 300 TTNSHPTVTL DLTRPNYDPN QSPNYPLSSS SLSFSSSDRP SPSNTRTLSF NGLRSEAPLS 360 TYSQMARLSH QTKLSGQR

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MIKEETDSCV HPFDGVMAES DKEVELDATK AKVDKVREEN KKLKLLLTTT LTDYNSLQMH  60
VSNVIRRQQE ASMEQDRNGH EDFGVDISLR LGRSDPNISK KEDEIVKISV DKEGSDKKRV  120
RIQSCEDQKT DRTMKLDYLS MDVKSKTAEN KCVSSMKDVK TSRNEDHQEV FEGREQPGSK  180
KTRVCVKAPC EDPSINDGCQ WRKYGQKTAK ANPLPRAYYR CSMSSNCPVR KQVQRCGEDD  240
TSAYMTTYEG NHDHPLPMEA THMAAGTSAA ASLLQCGSSS SSSSSSSLSY FFPFHHFSVS  300
TTNSHPTVTL DLTRPNYDPN QSPNYPLSSS SLSFSSSDRP SPSNTRTLSF NGLRSEAPLS  360
TYSQMARLSH QTKLSGQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-18	195	257	14	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g24930

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105649.1	0.0	PREDICTED: probable WRKY transcription factor 36
Refseq	XP_013728850.1	0.0	probable WRKY transcription factor 36
Swissprot	Q9CAR4	1e-158	WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBL	A0A397YXU6	0.0	A0A397YXU6_BRACM; Uncharacterized protein
STRING	Bra007884.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13913	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69810.1	1e-137	WRKY DNA-binding protein 36

Publications ? help Back to Top
Yang Y, et al. UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis. Nat Plants, 2018. 4(2): p. 98-107 [PMID:29379156]