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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g24690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | Dof | ||||||||
Protein Properties | Length: 396aa MW: 44217.9 Da PI: 8.9866 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.1 | 4e-38 | 127 | 186 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + k+l+cprC+s+ntkfCyynny++sqPryfC++C+ryWt+GG++rnvPvG+grrknk + Tp5g24690 127 PGKILPCPRCESANTKFCYYNNYNVSQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGW 186 568899***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-29 | 124 | 184 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-31 | 130 | 184 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.546 | 131 | 185 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 133 | 169 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MSKSRDTEIK LFGKTITSPL AVNHYDPSSF STVVHGVSDH IKEAFASSSS SSSSCSLSIG 60 PDKVLAYQNE QDNSRFRDPY MLSDLNEPPK AVSEISSPGS SKTNTDQQSE ITTTSTSFDK 120 PTTLKKPGKI LPCPRCESAN TKFCYYNNYN VSQPRYFCRN CQRYWTAGGS MRNVPVGSGR 180 RKNKGWASSN HYLQVTSEDH ENSNNNNNSG TILSFGSSES SVTETVKHQS RDTKITADSA 240 YQENKTHQGF LHPQVMLPNN SSPWPYQWSP TGPTNNFYPI PFYWGCTVPI WPTSETPPCL 300 GKRSRDQTEG EAKDTTTTTR ARLVSESLRI SEATKRAVWP KVPTEPEKTT EVFSLFNGFE 360 TKGSNRRSLV PETSINIQAN PAAMSRSMNF RERMQQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00223 | DAP | Transfer from AT1G69570 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g24690 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353482 | 0.0 | AK353482.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-45-E10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588706.1 | 0.0 | PREDICTED: cyclic dof factor 5-like | ||||
Swissprot | Q9SEZ3 | 0.0 | CDF5_ARATH; Cyclic dof factor 5 | ||||
TrEMBL | A0A0D3CXN1 | 0.0 | A0A0D3CXN1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6HBJ4 | 0.0 | A0A3P6HBJ4_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g095390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13090 | 17 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69570.1 | 0.0 | Dof family protein |
Publications ? help Back to Top | |||
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