PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g24670
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 353aa    MW: 40580 Da    PI: 6.1812
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g24670genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.78.2e-201053245
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               + en   rq t++kR++gi+KKA ELS+LCd++v +++fs+ gk
  Tp5g24670 10 QLENVNARQATYCKRKHGIIKKARELSILCDIDVVLLMFSPVGK 53
               6799999*********************************9986 PP
2K-box226.9e-091151872389
      K-box  23 kLkkeienLq.....reqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                 L ++++ Lq        R   + +Le+ + + +LqqLe+ + +sl +iR++K+++l  q ++l   e ++q 
  Tp5g24670 115 VLSEKVRFLQthlseIHTRLSYWTELEKFNsIDDLQQLENSVRRSLYEIRAHKENMLQHQQQQLMSSECKNQL 187
                566677777766654455777899999985389**************************99998877766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.82153IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-23292IPR002100Transcription factor, MADS-box
CDDcd001208.10E-22254No hitNo description
PRINTSPR004043.5E-15323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-181254IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-153859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.718106205IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRVKLKIKQ LENVNARQAT YCKRKHGIIK KARELSILCD IDVVLLMFSP VGKPSLCIGK  60
HSIGEVIAKF AQLTPQERAK RKLENLEALK KTFTKLDHDV NVPEFLGRSK PTVEVLSEKV  120
RFLQTHLSEI HTRLSYWTEL EKFNSIDDLQ QLENSVRRSL YEIRAHKENM LQHQQQQLMS  180
SECKNQLQTE IDLDFGVDME QQLENFSWVR TDENMNAPLK EEDPNLQFCQ TYNDITCSAS  240
SSFESYSGLF AKSSDIETPK LKTSDVPGTS ANPNQQFSNL SFLNDPKLQQ LAEWNLLGNP  300
ADYYVSQILE ASYRPQFGGN WPSSETLTYP VTVFDDPLFS RFCYCRSCFA DCF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g24670
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466350.10.0PREDICTED: agamous-like MADS-box protein AGL30
SwissprotQ1PFA42e-84AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLM4CJK90.0M4CJK9_BRARP; Uncharacterized protein
STRINGBra004393.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149561620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.10.0AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]