PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

SBP

Protein Properties

Length: 413aa MW: 46922.4 Da PI: 8.9108

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g24220	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.2	1.8e-41	137	213	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls k+yh++h+vCe+hsk++vv+vsg+eqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk++ Tp5g24220 137 MCQVYGCNMDLSFSKDYHKKHRVCETHSKTSVVIVSGTEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPS 213 6**************************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.4E-33	132	199	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.274	135	212	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.92E-39	136	215	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.0E-31	138	211	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010468	Biological Process	regulation of gene expression
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MDPWSYGRSV FLANGTTLLP SDSFAENRRS MARFEQGISN ELESNDVLMS GMVSKSNGLG 60 AVSISKVAST SCVVPSSLLH VEEEDNENQS SSSKLSRIDF KLRSFMDYGN DDGTSFRDFS 120 LPAKKTRVSN PYSQNPMCQV YGCNMDLSFS KDYHKKHRVC ETHSKTSVVI VSGTEQRFCQ 180 QCSRFHFLSE FDDGKRSCRR RLAGHNERRR KPSFYFLPGK RHKLLRTSQG NKFLENSSVN 240 DFSLVLRESL PGSFLYRVMD EHDHRASRLV SFKEEPIFTG QNRIYESKTA IYSPEASGVS 300 SIWDLQEVVP RSTCALSLLS THSQQHLSES PNKSFLITQQ NQNLNHSTVH HHQMQPLRID 360 PGKTKSGSSS RKGKGSSTVD LLQLSSHLQR IEQQQRNFTD EVKQEYNNEL CFP

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MDPWSYGRSV FLANGTTLLP SDSFAENRRS MARFEQGISN ELESNDVLMS GMVSKSNGLG  60
AVSISKVAST SCVVPSSLLH VEEEDNENQS SSSKLSRIDF KLRSFMDYGN DDGTSFRDFS  120
LPAKKTRVSN PYSQNPMCQV YGCNMDLSFS KDYHKKHRVC ETHSKTSVVI VSGTEQRFCQ  180
QCSRFHFLSE FDDGKRSCRR RLAGHNERRR KPSFYFLPGK RHKLLRTSQG NKFLENSSVN  240
DFSLVLRESL PGSFLYRVMD EHDHRASRLV SFKEEPIFTG QNRIYESKTA IYSPEASGVS  300
SIWDLQEVVP RSTCALSLLS THSQQHLSES PNKSFLITQQ NQNLNHSTVH HHQMQPLRID  360
PGKTKSGSSS RKGKGSSTVD LLQLSSHLQR IEQQQRNFTD EVKQEYNNEL CFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-29	137	211	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g24220

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391054.1	0.0	squamosa promoter-binding-like protein 6
Refseq	XP_024007394.1	0.0	squamosa promoter-binding-like protein 6
Refseq	XP_024007399.1	0.0	squamosa promoter-binding-like protein 6
Swissprot	Q94JW8	0.0	SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBL	V4JSQ4	0.0	V4JSQ4_EUTSA; Uncharacterized protein
STRING	XP_006391054.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9275	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-159	SBP family protein

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]