PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g23590
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CO-like
Protein Properties Length: 402aa    MW: 45598.3 Da    PI: 5.7427
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g23590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.2e-071457340
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               +r C+ + + +++++C  ++ +lC++C  + H+       H++v
  Tp5g23590 14 ARACDSCVKRRARWYCPADDAFLCHSCDGSVHSAnplarrHERV 57
               578*****************************657888888876 PP
2CCT68.51.8e-23353396144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Tp5g23590 353 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 396
                9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6941259IPR000315B-box-type zinc finger
SMARTSM003361.9E-101259IPR000315B-box-type zinc finger
PfamPF006435.7E-61457IPR000315B-box-type zinc finger
CDDcd000212.25E-91559No hitNo description
PfamPF062035.2E-18353395IPR010402CCT domain
PROSITE profilePS5101716.083353395IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MMKSLANAVG GKTARACDSC VKRRARWYCP ADDAFLCHSC DGSVHSANPL ARRHERVRLK  60
SASAIKYRSD SSSSPHPAAW HQGFTRKART PRGGKKSHTM VFHDLVPEMS SEDQSFEVEE  120
QLIFEVPVLN PMVEEQCLNK SVETKLEFPM MPVSFKSSEV EDDNAESCLN GLFPTDMELA  180
QFSADVETLL GGGTDREFHA MEELGLGEKL KIEKEEVEEE EEVATREVCD LDDVDETTPF  240
EISFDYEYSH NTTFEEEEDM VKNMIDVGVN EMSGTIKEEK TEKVLMLRLD YKSVISTWGG  300
QGTPWTAREP PQIDLDMLCC PTYYTGESGG EAHHHKHFHG LGLHSGEAMD GGREARVSRY  360
REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRSSIAA AH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363379RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g23590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105042.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like
RefseqXP_013649118.10.0zinc finger protein CONSTANS-LIKE 6-like
SwissprotQ8LG760.0COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A397YP880.0A0A397YP88_BRACM; Uncharacterized protein
STRINGXP_010415472.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]