PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g23590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | CO-like | ||||||||
Protein Properties | Length: 402aa MW: 45598.3 Da PI: 5.7427 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.5 | 1.2e-07 | 14 | 57 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + +++++C ++ +lC++C + H+ H++v Tp5g23590 14 ARACDSCVKRRARWYCPADDAFLCHSCDGSVHSAnplarrHERV 57 578*****************************657888888876 PP | |||||||
2 | CCT | 68.5 | 1.8e-23 | 353 | 396 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Tp5g23590 353 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 396 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.694 | 12 | 59 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.9E-10 | 12 | 59 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.7E-6 | 14 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.25E-9 | 15 | 59 | No hit | No description |
Pfam | PF06203 | 5.2E-18 | 353 | 395 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.083 | 353 | 395 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MMKSLANAVG GKTARACDSC VKRRARWYCP ADDAFLCHSC DGSVHSANPL ARRHERVRLK 60 SASAIKYRSD SSSSPHPAAW HQGFTRKART PRGGKKSHTM VFHDLVPEMS SEDQSFEVEE 120 QLIFEVPVLN PMVEEQCLNK SVETKLEFPM MPVSFKSSEV EDDNAESCLN GLFPTDMELA 180 QFSADVETLL GGGTDREFHA MEELGLGEKL KIEKEEVEEE EEVATREVCD LDDVDETTPF 240 EISFDYEYSH NTTFEEEEDM VKNMIDVGVN EMSGTIKEEK TEKVLMLRLD YKSVISTWGG 300 QGTPWTAREP PQIDLDMLCC PTYYTGESGG EAHHHKHFHG LGLHSGEAMD GGREARVSRY 360 REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRSSIAA AH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 363 | 379 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g23590 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105042.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like | ||||
Refseq | XP_013649118.1 | 0.0 | zinc finger protein CONSTANS-LIKE 6-like | ||||
Swissprot | Q8LG76 | 0.0 | COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6 | ||||
TrEMBL | A0A397YP88 | 0.0 | A0A397YP88_BRACM; Uncharacterized protein | ||||
STRING | XP_010415472.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2467 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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