PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp5g23580

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

LBD

Protein Properties

Length: 232aa MW: 25513.8 Da PI: 8.22

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g23580	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.5	5.5e-30	4	104	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++ +q++++ + Tp5g23580 4 SCNGCRVLRKGCNQDCTIRPCLqwiksPDSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDSV 103 6*********************************************************************************************999876 PP DUF260 96 l 96 l Tp5g23580 104 L 104 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.737	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-23	4	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS PDSQANATLF LAKFYGRAGL LNLIESGPDH 60 LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV DSVLNGLPIT HTPLPSASAS 120 HQIIPPHRTY DIRHVAKDPT TGGDSSQSLP LAPRVNGSKT KTQTGRFKRL ADETVNYQLG 180 ECSHDTWQHQ SSGQFALETV ESRREAPLNR SSNLGFYDQV DINEVGLELR LG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g23580

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473869	1e-161	AB473869.1 Arabidopsis thaliana ASL36 mRNA for ASYMMETRIC LEAVES2-like 36 protein, complete cds.
GenBank	AF447896	1e-161	AF447896.1 Arabidopsis thaliana LOB DOMAIN 42 (LBD42) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391131.1	1e-153	LOB domain-containing protein 42
Swissprot	Q9CA30	1e-146	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	V4KF16	1e-152	V4KF16_EUTSA; Uncharacterized protein
STRING	XP_006391131.1	1e-153	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8463	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	1e-148	LOB domain-containing protein 42