PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g22080
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 305aa    MW: 34572 Da    PI: 6.253
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g22080genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.3e-152876350
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
               +++++  +  + kR +++lKKA+ELS LC+++v++i + s+g+l ++++
  Tp5g22080 28 SSSSTSSSSLYKKRETTVLKKAYELSELCGVDVCIICYDSEGNLvKTWP 76
               5666777777999************************988876537887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-5777IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.4843071IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-1331112IPR002100Transcription factor, MADS-box
PfamPF003193.9E-123271IPR002100Transcription factor, MADS-box
CDDcd002665.55E-1738103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTTTTKTCRD KLSVRKDTIF KKPSSSCSSS STSSSSLYKK RETTVLKKAY ELSELCGVDV  60
CIICYDSEGN LVKTWPEEEA KVRVMAERFS RLNEQERNKK STNLSRFLNK KMIDEKKASF  120
TTKDNRFSQK VLEIEESLES RVGIFQEKLQ RLLLLPGQDH QTVVSTNLSS NPSSLINVDH  180
PSTSESPADL STTSLKHPSN FSILLYNHDN GTFTQLADSA TPIFEQPEIP CNQDYGTNYL  240
DLLLLGEQGI ENYNNFDLPL STIPPPLMQT QPQLFQQFDH QFMQTQPAVP YNHIPYCGNP  300
TLMFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g22080
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443457.11e-120PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLA0A3P6BZS02e-81A0A3P6BZS0_BRACM; Uncharacterized protein
TrEMBLM4CIN72e-81M4CIN7_BRARP; Uncharacterized protein
STRINGBra004071.1-P3e-82(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26950.12e-56AGAMOUS-like 93