PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g21380
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 518aa    MW: 57140.8 Da    PI: 6.3102
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g21380genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.93.6e-1341505061374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++Ll+cAeav+++d+++a+al++++  las+++ +m+++a+yf+e+La+r++r    +y    p+++    ss + + ++ f+e +P+lkf+h+taNq
  Tp5g21380 150 LVHALLACAEAVQQNDMKQADALVKHVGLLASSQAGAMRKVATYFAEGLARRIYR----IY----PRDDV-GLSSFSDTLHTHFYESCPYLKFAHFTANQ 240
                689****************************************************....55....33332.123333334445***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.g 199
                aIlea++++e+vH+iD+ ++qGlQWpaL+qaLa Rp+gpp +R+Tg+gs  s s+e+++e+g++L ++A+++gv+f+f+ +v ++l+dl++e+L++k+  
  Tp5g21380 241 AILEAFATAEKVHVIDLKLNQGLQWPALIQALALRPGGPPDFRLTGIGS--SLSSESIQEVGWKLGQLANAVGVNFKFKGIVLNSLSDLKPEMLEIKTgS 338
                *************************************************..56*********************************************99 PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                E++aVn+v++lhrll++++s+++    +L ++ks++P++++vveqea+hn++ Fl+rf+e+l+yys+lfdsle       ++++++++ +lgr+i n+va
  Tp5g21380 339 ESVAVNSVFELHRLLAHPGSIDN----ILLTIKSIKPDIITVVEQEANHNGAVFLDRFTESLHYYSSLFDSLEGP----PSQDRVMSELYLGRQILNLVA 430
                ******************99999....*********************************************999....46677788888********** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ceg++r+erhetl +Wr+r++  GFkpv+++++a+kqa++ll+ ++  dgy+vee++g+l+lgW++rpL+++SaWr
  Tp5g21380 431 CEGEDRVERHETLVQWRNRFGLGGFKPVNIGSNAYKQASMLLALYAgADGYKVEENEGCLLLGWQTRPLIATSAWR 506
                ***************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.2E-3831100No hitNo description
PfamPF120411.5E-323194IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.035124485IPR005202Transcription factor GRAS
PfamPF035141.3E-131150506IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0042538Biological Processhyperosmotic salinity response
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MKREHNHRET SAGKVGSSSM TANKEETGGF DELLVVLGYK VRSSDMADVA HKLEQLEMVL  60
GDGISHLSDD TVHYNPSDLS GWVDSLLSDL NPTRDQVKPD PDSEYDLSAI PGSVAYPRGK  120
RMRMGSDSST PTTTTRSMVV LDSQETGVRL VHALLACAEA VQQNDMKQAD ALVKHVGLLA  180
SSQAGAMRKV ATYFAEGLAR RIYRIYPRDD VGLSSFSDTL HTHFYESCPY LKFAHFTANQ  240
AILEAFATAE KVHVIDLKLN QGLQWPALIQ ALALRPGGPP DFRLTGIGSS LSSESIQEVG  300
WKLGQLANAV GVNFKFKGIV LNSLSDLKPE MLEIKTGSES VAVNSVFELH RLLAHPGSID  360
NILLTIKSIK PDIITVVEQE ANHNGAVFLD RFTESLHYYS SLFDSLEGPP SQDRVMSELY  420
LGRQILNLVA CEGEDRVERH ETLVQWRNRF GLGGFKPVNI GSNAYKQASM LLALYAGADG  480
YKVEENEGCL LLGWQTRPLI ATSAWRLNPY LYLKKSRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6514550514378Protein SCARECROW
5b3h_A4e-6514550513377Protein SCARECROW
5b3h_D4e-6514550513377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g21380
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated upon GA treatment.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127484.10.0PREDICTED: DELLA protein RGL1
SwissprotQ9C8Y30.0RGL1_ARATH; DELLA protein RGL1
TrEMBLA0A078JY940.0A0A078JY94_BRANA; BnaCnng68300D protein
STRINGBo2g052880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yan A, et al.
    AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis.
    PLoS ONE, 2014. 9(1): p. e85208
    [PMID:24404203]
  3. Gallego-Giraldo C, et al.
    Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    Plant J., 2014. 79(6): p. 1020-1032
    [PMID:24961590]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  6. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  7. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]
  8. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]
  9. Zhang L,Chen L,Yu D
    Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering.
    Plant Physiol., 2018. 176(1): p. 790-803
    [PMID:29133369]