PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GRAS

Protein Properties

Length: 609aa MW: 69223.2 Da PI: 5.1315

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g15090	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	401.3	9.9e-123	234	604	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +++lL++cA+av+s d++ a + L++++ ++s++gd++qRl yf+eAL ar+++ ++ + + ++s++ +++ l+a+k f++++P+l +++ taN+ Tp5g15090 234 MRNLLMQCAQAVASFDQRIAAEKLKEIRAHSSSNGDATQRLGYYFAEALDARITG----TMTTPVSATSSRTPMVDILKAYKEFVQACPTLIMCYYTANR 329 579**************************************************....333333333444459********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I+e +++++++HiiDf+i +G+QWp+L+qaL+sRp+gpp lR+Tg++ p++g +e++eetg+rL++f+++++vpfe+++ +ak++e+++l+eL +++ Tp5g15090 330 TIYELASKASTLHIIDFGILYGFQWPCLIQALSSRPGGPPVLRVTGIELPQPGfrPSERVEETGRRLKRFCDKFKVPFEYSF-IAKNWETITLDELVINS 428 ************************************************9*************************.7************ PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E+++Vn++l+l++++de+vsl+s+rd+ Lkl+++++P ++v++e + +ns+ Fl+rf eal ++s+lfd++e+++++e++ r+ vE+el+ r++++v+ Tp5g15090 429 EETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPGLFVFAEINGMYNSPYFLTRFKEALFHCSSLFDMFETNISEENDCRTLVEKELIIRDAMSVI 528 ************************************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 acegaer++r et+++W+ r+ +aGFkp++l+++++k+ k l+r+ + + + ++++++++++gWk+r L+++S+W+ Tp5g15090 529 ACEGAERFARPETYKQWQVRILRAGFKPAKLNKQIMKEGKELVRERYHKDFVIDNDNHWMFQGWKGRVLYALSCWK 604 *******************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.133	208	584	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-120	234	604	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MDAILQVPVD GFKFENGSGS CCKPRNNLDS GTNHFTCFNE STESQNLSPT ESTESQNTSS 60 PTEPTVCSDY HPFFKYINDM LMEEDLQGQS RMLEDSLALQ AAERSFFQVL QEDQTLLSSD 120 KISGDHDDCS LANFSSLTNL HQPISGFTGS PEILEESSRR YRLRDDDEED DLEGGRKSKL 180 PAISTVDELE EKFEEVLLVC QKNDHGEATP NKTGQAKSSS SRSKPRKLDQ PVDMRNLLMQ 240 CAQAVASFDQ RIAAEKLKEI RAHSSSNGDA TQRLGYYFAE ALDARITGTM TTPVSATSSR 300 TPMVDILKAY KEFVQACPTL IMCYYTANRT IYELASKAST LHIIDFGILY GFQWPCLIQA 360 LSSRPGGPPV LRVTGIELPQ PGFRPSERVE ETGRRLKRFC DKFKVPFEYS FIAKNWETIT 420 LDELVINSEE TTVVNCILRL QYTPDETVSL NSPRDTALKL FRDINPGLFV FAEINGMYNS 480 PYFLTRFKEA LFHCSSLFDM FETNISEEND CRTLVEKELI IRDAMSVIAC EGAERFARPE 540 TYKQWQVRIL RAGFKPAKLN KQIMKEGKEL VRERYHKDFV IDNDNHWMFQ GWKGRVLYAL 600 SCWKPAKKQ

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MDAILQVPVD GFKFENGSGS CCKPRNNLDS GTNHFTCFNE STESQNLSPT ESTESQNTSS  60
PTEPTVCSDY HPFFKYINDM LMEEDLQGQS RMLEDSLALQ AAERSFFQVL QEDQTLLSSD  120
KISGDHDDCS LANFSSLTNL HQPISGFTGS PEILEESSRR YRLRDDDEED DLEGGRKSKL  180
PAISTVDELE EKFEEVLLVC QKNDHGEATP NKTGQAKSSS SRSKPRKLDQ PVDMRNLLMQ  240
CAQAVASFDQ RIAAEKLKEI RAHSSSNGDA TQRLGYYFAE ALDARITGTM TTPVSATSSR  300
TPMVDILKAY KEFVQACPTL IMCYYTANRT IYELASKAST LHIIDFGILY GFQWPCLIQA  360
LSSRPGGPPV LRVTGIELPQ PGFRPSERVE ETGRRLKRFC DKFKVPFEYS FIAKNWETIT  420
LDELVINSEE TTVVNCILRL QYTPDETVSL NSPRDTALKL FRDINPGLFV FAEINGMYNS  480
PYFLTRFKEA LFHCSSLFDM FETNISEEND CRTLVEKELI IRDAMSVIAC EGAERFARPE  540
TYKQWQVRIL RAGFKPAKLN KQIMKEGKEL VRERYHKDFV IDNDNHWMFQ GWKGRVLYAL  600
SCWKPAKKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-46	240	605	25	380	Protein SCARECROW
5b3h_A	3e-46	240	605	24	379	Protein SCARECROW
5b3h_D	3e-46	240	605	24	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g15090

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352711	0.0	AK352711.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-F16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013711631.1	0.0	scarecrow-like protein 30 isoform X1
Swissprot	Q9SNB8	0.0	SCL30_ARATH; Scarecrow-like protein 30
TrEMBL	E4MW14	0.0	E4MW14_EUTHA; mRNA, clone: RTFL01-05-F16
TrEMBL	V4MXT7	0.0	V4MXT7_EUTSA; Uncharacterized protein
STRING	XP_006418880.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46600.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]