PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MYB

Protein Properties

Length: 303aa MW: 34879.5 Da PI: 6.8281

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g12400	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.4	1.9e-14	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++ G+g +W + ++++g++R++k+c++rw++yl Tp5g12400 14 KGPWSPEEDAKLKSYIETSGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.9	4.1e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eE+ ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ Tp5g12400 69 GGFSEEEENIICNLYLTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.815	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.76E-25	11	109	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-11	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	8.6E-14	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-23	15	69	IPR009057	Homeodomain-like
CDD	cd00167	1.02E-7	16	62	No hit	No description
PROSITE profile	PS51294	20.546	63	117	IPR017930	Myb domain
SMART	SM00717	8.1E-11	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-11	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-23	70	118	IPR009057	Homeodomain-like
CDD	cd00167	3.29E-7	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE TSGTGGNWIA LPHKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEENIIC NLYLTIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLIIK 120 QRKEIQEACM EQQEMMVMMK RQQHQQQQQI QTSFMMRQDQ TMFTWPLQQL PYHHHDDQVP 180 TLVMNSLCDQ EDIKPAIIKN MVKIEDQEPE RTNAFDHLSF SQLLLDPNND HLGSGEGFCM 240 NSISSTNANC PLFNTSINHQ WFGNFHDEAT DLFSGATSTS ADQSTIRWED ISSLVYSDSK 300 QCC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-23	14	117	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00089	SELEX	Transfer from AT3G49690	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g12400

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519597	0.0	AY519597.1 Arabidopsis thaliana MYB transcription factor (At3g49690) mRNA, complete cds.
GenBank	BT029224	0.0	BT029224.1 Arabidopsis thaliana At3g49690 mRNA, complete cds.
GenBank	Y14209	0.0	Y14209.1 A.thaliana mRNA for AtMYB84 R2R3-MYB transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013603272.1	0.0	PREDICTED: transcription factor RAX3
Swissprot	Q9M2Y9	1e-172	RAX3_ARATH; Transcription factor RAX3
TrEMBL	A0A078F4Y6	0.0	A0A078F4Y6_BRANA; BnaA06g15640D protein
STRING	Bo8g078940.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2941	25	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	1e-152	myb domain protein 84

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Pal S, et al. TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. Plant Physiol., 2017. 175(2): p. 916-926 [PMID:28827455]