PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g12160
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 414aa    MW: 46421.4 Da    PI: 6.355
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g12160genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3236.1e-99304112373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilkfshlt 97 
                ++lLl+cA+a++s+d +la+++L+ l+++a pdg +++qRl++ f++AL +r +++ ++l+ a+ ++   ++ ++ +++++++l  f++++P+++f++++
  Tp5g12160  30 EQLLLHCATAIESNDVALAHQILWVLNNIAPPDGdSSTQRLTSAFLRALLSRAVSKIPTLFPAVgNAVFLPPASELHRFSVVELagFVDLTPWHRFGYIA 129
                79********************************779*************************998777777788888999999899************** PP

       GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vakrledlel 191
                aN aIl aveg ++vHi+D+++++++Q p+L++a+as+ ++pp l++T+v++++ +    + ++ee+g++L +fA++ +++++f+++   +++ +++l l
  Tp5g12160 130 ANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMASKLNKPPLLKLTVVSASN-FppfINISYEELGSKLVNFATTRNIQMQFTIVpstYSDGFSSL-L 227
                ***************************************************955.45889**************************988666777777.9 PP

       GRAS 192 eeLrvkp...gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                ++L++ p   +Eal+Vn++++l +++++ ++++s   r+ +Lk+++sl+P++v+++e++ad++s+++++r+ +a++y++  fd++++ +   + +r+++E
  Tp5g12160 228 QQLQMYPssfNEALVVNCHMMLRYIPEDILTSSSssIRTVFLKQLRSLNPTIVTLIEEDADLTSKNLATRLRSAFNYFWIPFDTTDTFM---TVQRRWYE 324
                *****9999*****************997777665689**************************************************6...899***** PP

       GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                +e ++++i+nvva+eg er+er+et+++W er++ea F+ v+++e+a+++ k++l++++ ++g++ +++++slvl+Wk++++v++++W
  Tp5g12160 325 AE-ISWKIENVVAKEGVERVERTETKSRWLERMREADFGGVRVKEEAVSDLKAMLEEHAvGWGMKKDDDDESLVLTWKGHSVVFATVW 411
                **.************************************************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.5683391IPR005202Transcription factor GRAS
PfamPF035142.1E-9630411IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MTKTRILNPT RFLSPKSRHC GGGGDADFME QLLLHCATAI ESNDVALAHQ ILWVLNNIAP  60
PDGDSSTQRL TSAFLRALLS RAVSKIPTLF PAVGNAVFLP PASELHRFSV VELAGFVDLT  120
PWHRFGYIAA NAAILTAVEG YSTVHIVDLS LTHCMQIPTL IDAMASKLNK PPLLKLTVVS  180
ASNFPPFINI SYEELGSKLV NFATTRNIQM QFTIVPSTYS DGFSSLLQQL QMYPSSFNEA  240
LVVNCHMMLR YIPEDILTSS SSSIRTVFLK QLRSLNPTIV TLIEEDADLT SKNLATRLRS  300
AFNYFWIPFD TTDTFMTVQR RWYEAEISWK IENVVAKEGV ERVERTETKS RWLERMREAD  360
FGGVRVKEEA VSDLKAMLEE HAVGWGMKKD DDDESLVLTW KGHSVVFATV WVPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-522441328420Protein SHORT-ROOT
5b3h_E3e-522441328420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g12160
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115681.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A397XZB30.0A0A397XZB3_BRACM; Uncharacterized protein
STRINGBra036041.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein