 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp5g12050 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
MYB |
| Protein Properties |
Length: 304aa MW: 33312.4 Da PI: 8.0594 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp5g12050 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 60.6 | 3.2e-19 | 6 | 51 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEd++l + v+++G+++W++I++ ++ gR++k+c++rw +
Tp5g12050 6 KGPWSQEEDDQLRRMVEKYGPRNWSAISKSIP-GRSGKSCRLRWCNQ 51
79******************************.***********985 PP
|
| 2 | Myb_DNA-binding | 53.1 | 7.4e-17 | 60 | 102 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++++eEde +v a +++G++ W+tIar ++ gRt++ +k++w++
Tp5g12050 60 PFSPEEDETIVSARAKFGNK-WATIARLLN-GRTDNAVKNHWNST 102
89******************.*********.***********986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MADRVKGPWS QEEDDQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP 60
FSPEEDETIV SARAKFGNKW ATIARLLNGR TDNAVKNHWN STLKRKCGGG DGNFVVMTTE 120
EDQDRPKKRR SVSSESAPQV DTGLYMIPES PTGIDVVSDS STIPSPPSPV AAQLFKPIPV 180
SGSFPVPPVE MSSSSEDPTT SLSLSLSLPG ADVSQESKIT GSSHSSLLFP RFESQMKINV 240
EERGEALVGR RAEFMTVVQE MIKAEVRSYM AEMQKNSGGG GLFVGGFFDS GNGEKKNVQK 300
NQIG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 5e-39 | 5 | 106 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 3e-38 | 5 | 106 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 3e-38 | 5 | 106 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 4e-39 | 5 | 106 | 3 | 104 | C-Myb DNA-Binding Domain |
| 1msf_C | 4e-39 | 5 | 106 | 3 | 104 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KC966743 | 1e-119 | KC966743.1 Brassica napus MYB transcription factor 77 (MYB77.1) mRNA, complete cds. |
