PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GRAS

Protein Properties

Length: 562aa MW: 62868.6 Da PI: 5.4683

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g11570	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	353.6	3e-108	198	562	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103 ++ +cA+ +s+ + a ++L r++e++s++g+p++R+ +yf+eAL+++l++ k+ + + ++++ + ++k+++e++P+ kf+hltaNqaIl Tp5g11570 198 AIHDCAR-ISDIEPDVAAKTLIRIRETVSESGNPTERVGFYFAEALSSKLSS------KQTDSPAP---SQEDFILSYKTLNEACPYSKFAHLTANQAIL 287 6677888.78888999*********************************9......33333333...36899********************** PP GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 ea+++++ +Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p+ g +l +tg+rL++fA+ l+++fef + + + ++ l+ +++rv+p+E Tp5g11570 288 EATHKSSNIHIVDFGIFQGIQWAALLQALATRASGKPaRIRISGIPAPSLGesPGPSLIATGNRLRDFATLLELNFEFYP-ILTPIHLLNGSSFRVDPDE 386 *****************************77666******99988999********************.799************ PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 +laVn++l+l++llde++++ + + L+l +sl+P+vv++ e e+++n+ +F++r+ +al++ysa+fdsle +l r+s+er vEr+l+ r+i+++v Tp5g11570 387 VLAVNFMLELYKLLDETATTVD---TALRLARSLNPRVVTLGEYEVSLNRIEFANRVKNALRFYSAVFDSLEPNLERDSKERLRVERVLFDRRISDLVRP 483 **********99999988...*********************************************************************87 PP GRAS 301 egae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374 +++ r r+e++e+Wr +e+aGF+pv+ s++a++qa+lll +++ s y++ +++ ++ l W++ +L++vS+Wr Tp5g11570 484 GNNKpgtRLGRMEEKEQWRVLMEKAGFEPVKPSNYAVSQANLLLWNYNySTLYSLVQSEPGFIsLAWNNVSLLTVSSWR 562 66555559************************************9999999999999*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.937	169	540	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-105	198	562	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MAYMCTDNGN LMAIAHQLIK QKQQQQSQKQ QQQEQNNPWP NQCLGYTLTG SGFSDPFQLT 60 GDPVSHFPHL EHHQNVAASE GFRFSSDGEF DSDEWMESLI NGRDALQTSQ DFSIHGHDPL 120 VEFPSQLSVP SSQPSDLNRV IFSDNDDSAS RLSHPPVPTA LWTPAPPSAR HHSPFSSSPP 180 QLVSTEPEFD LDQPILKAIH DCARISDIEP DVAAKTLIRI RETVSESGNP TERVGFYFAE 240 ALSSKLSSKQ TDSPAPSQED FILSYKTLNE ACPYSKFAHL TANQAILEAT HKSSNIHIVD 300 FGIFQGIQWA ALLQALATRA SGKPARIRIS GIPAPSLGES PGPSLIATGN RLRDFATLLE 360 LNFEFYPILT PIHLLNGSSF RVDPDEVLAV NFMLELYKLL DETATTVDTA LRLARSLNPR 420 VVTLGEYEVS LNRIEFANRV KNALRFYSAV FDSLEPNLER DSKERLRVER VLFDRRISDL 480 VRPGNNKPGT RLGRMEEKEQ WRVLMEKAGF EPVKPSNYAV SQANLLLWNY NYSTLYSLVQ 540 SEPGFISLAW NNVSLLTVSS WR

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MAYMCTDNGN LMAIAHQLIK QKQQQQSQKQ QQQEQNNPWP NQCLGYTLTG SGFSDPFQLT  60
GDPVSHFPHL EHHQNVAASE GFRFSSDGEF DSDEWMESLI NGRDALQTSQ DFSIHGHDPL  120
VEFPSQLSVP SSQPSDLNRV IFSDNDDSAS RLSHPPVPTA LWTPAPPSAR HHSPFSSSPP  180
QLVSTEPEFD LDQPILKAIH DCARISDIEP DVAAKTLIRI RETVSESGNP TERVGFYFAE  240
ALSSKLSSKQ TDSPAPSQED FILSYKTLNE ACPYSKFAHL TANQAILEAT HKSSNIHIVD  300
FGIFQGIQWA ALLQALATRA SGKPARIRIS GIPAPSLGES PGPSLIATGN RLRDFATLLE  360
LNFEFYPILT PIHLLNGSSF RVDPDEVLAV NFMLELYKLL DETATTVDTA LRLARSLNPR  420
VVTLGEYEVS LNRIEFANRV KNALRFYSAV FDSLEPNLER DSKERLRVER VLFDRRISDL  480
VRPGNNKPGT RLGRMEEKEQ WRVLMEKAGF EPVKPSNYAV SQANLLLWNY NYSTLYSLVQ  540
SEPGFISLAW NNVSLLTVSS WR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-140	194	562	3	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250\|UniProtKB:A0A024B7I0, ECO:0000250\|UniProtKB:Q53K16, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g11570

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006404015.1	0.0	scarecrow-like protein 7
Swissprot	Q9SCR0	0.0	SCL7_ARATH; Scarecrow-like protein 7
TrEMBL	V4LZW2	0.0	V4LZW2_EUTSA; Uncharacterized protein
STRING	XP_006404015.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4786	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50650.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]